def _loadGroupBox3(self, pmGroupBox):
"""
Load widgets in group box.
"""
# hover highlighting style and color
self.hoverHighlightingStyleComboBox = \
PM_ComboBox( pmGroupBox,
label = "Highlighting:",
)
self._loadHoverHighlightingStyleItems()
hhColorList = [
yellow, orange, red, magenta, cyan, blue, white, black, gray
]
hhColorNames = [
"Yellow (default)", "Orange", "Red", "Magenta", "Cyan", "Blue",
"White", "Black", "Other color..."
]
self.hoverHighlightingColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = hhColorList,
colorNames = hhColorNames,
color = env.prefs[hoverHighlightingColor_prefs_key]
)
# selection style and color
self.selectionStyleComboBox = \
PM_ComboBox( pmGroupBox,
label = "Selection:",
)
self._loadSelectionStyleItems()
selColorList = [
darkgreen, green, orange, red, magenta, cyan, blue, white, black,
gray
]
selColorNames = [
"Dark green (default)", "Green", "Orange", "Red", "Magenta",
"Cyan", "Blue", "White", "Black", "Other color..."
]
self.selectionColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = selColorList,
colorNames = selColorNames,
color = env.prefs[selectionColor_prefs_key]
)
return
def _loadWidgets(self):
"""
Load the widgets in the Groupbox
"""
baseNumberChoices = ('None (default)',
'Strands and segments',
'Strands only',
'Segments only')
self._baseNumberComboBox = \
PM_ComboBox( self,
label = "Base numbers:",
choices = baseNumberChoices,
setAsDefault = True)
numberingOrderChoices = ('5\' to 3\' (default)',
'3\' to 5\'' )
self._baseNumberingOrderComboBox = \
PM_ComboBox( self,
label = "Base numbers:",
choices = numberingOrderChoices,
setAsDefault = True)
prefs_key = dnaBaseNumberLabelColor_prefs_key
self._baseNumberLabelColorChooser = \
PM_ColorComboBox(self,
color = env.prefs[prefs_key])
def _loadGroupBox2(self, pmGroupBox):
"""
Load widgets in groubox 2.
"""
if self.editCommand and self.editCommand.struct:
length = self.editCommand.struct.length
width = self.editCommand.struct.width
spoke_radius = self.editCommand.struct.sradius
normcolor = self.editCommand.struct.normcolor
else:
length = 10
width = 1
spoke_radius = 0.2
normcolor = gray
self.motorLengthDblSpinBox = \
PM_DoubleSpinBox(pmGroupBox,
label = "Motor length :",
value = length,
setAsDefault = True,
minimum = 0.5,
maximum = 500.0,
singleStep = 0.5,
decimals = 1,
suffix = ' Angstroms')
self.motorWidthDblSpinBox = \
PM_DoubleSpinBox(pmGroupBox,
label="Motor width :",
value = width,
setAsDefault = True,
minimum = 0.1,
maximum = 50.0,
singleStep = 0.1,
decimals = 1,
suffix = ' Angstroms')
self.spokeRadiusDblSpinBox = \
PM_DoubleSpinBox(pmGroupBox,
label = "Spoke radius :",
value = spoke_radius,
setAsDefault = True,
minimum = 0.1,
maximum = 50.0,
singleStep = 0.1,
decimals = 1,
suffix = ' Angstroms')
self.motorColorComboBox = \
PM_ColorComboBox(pmGroupBox,
color = normcolor)
return
def _load5PrimeEndArrowAndCustomColor(self, pmGroupBox):
"""
Loads 5' end custom color checkbox and color chooser dialog
"""
self.pmGroupBox2 = PM_GroupBox(pmGroupBox, title="5' end:")
self.arrowsOnFivePrimeEnds_checkBox = PM_CheckBox(
self.pmGroupBox2,
text="Show arrowhead",
widgetColumn=0,
setAsDefault=True,
spanWidth=True)
prefs_key = self._prefs_key_arrowsOnFivePrimeEnds()
if env.prefs[prefs_key]:
self.arrowsOnFivePrimeEnds_checkBox.setCheckState(Qt.Checked)
else:
self.arrowsOnFivePrimeEnds_checkBox.setCheckState(Qt.Unchecked)
self.strandFivePrimeArrowheadsCustomColorCheckBox = PM_CheckBox(
self.pmGroupBox2,
text="Display custom color",
widgetColumn=0,
setAsDefault=True,
spanWidth=True)
prefs_key = self._prefs_key_dnaStrandFivePrimeArrowheadsCustomColor()
self.fivePrimeEndColorChooser = \
PM_ColorComboBox(self.pmGroupBox2,
color = env.prefs[prefs_key]
)
prefs_key = self._prefs_key_useCustomColorForFivePrimeArrowheads()
if env.prefs[prefs_key]:
self.strandFivePrimeArrowheadsCustomColorCheckBox.setCheckState(
Qt.Checked)
self.fivePrimeEndColorChooser.show()
else:
self.strandFivePrimeArrowheadsCustomColorCheckBox.setCheckState(
Qt.Unchecked)
self.fivePrimeEndColorChooser.hide()
return
def _loadGroupBox3(self, pmGroupBox):
"""
Load widgets in the grid plane group box.
@param pmGroupBox: The grid group box in the PM.
@type pmGroupBox: L{PM_GroupBox}
"""
self.gridPlaneCheckBox = \
PM_CheckBox( pmGroupBox,
text = "Show grid",
widgetColumn = 0,
setAsDefault = True,
spanWidth = True
)
connect_checkbox_with_boolean_pref(self.gridPlaneCheckBox,
PlanePM_showGrid_prefs_key)
self.gpXSpacingDoubleSpinBox = \
PM_DoubleSpinBox( pmGroupBox,
label = "X Spacing:",
value = 4.000,
setAsDefault = True,
minimum = 1.00,
maximum = 200.0,
decimals = 3,
singleStep = 1.0,
spanWidth = False)
self.gpYSpacingDoubleSpinBox = \
PM_DoubleSpinBox( pmGroupBox,
label = "Y Spacing:",
value = 4.000,
setAsDefault = True,
minimum = 1.00,
maximum = 200.0,
decimals = 3,
singleStep = 1.0,
spanWidth = False)
lineTypeChoices = ['Dotted (default)', 'Dashed', 'Solid']
self.gpLineTypeComboBox = \
PM_ComboBox( pmGroupBox ,
label = "Line type:",
choices = lineTypeChoices,
setAsDefault = True)
hhColorList = [
black, orange, red, magenta, cyan, blue, white, yellow, gray
]
hhColorNames = [
"Black (default)", "Orange", "Red", "Magenta", "Cyan", "Blue",
"White", "Yellow", "Other color..."
]
self.gpColorTypeComboBox = \
PM_ColorComboBox( pmGroupBox,
colorList = hhColorList,
colorNames = hhColorNames,
color = black )
self.pmGroupBox5 = PM_GroupBox(pmGroupBox)
self.gpDisplayLabels =\
PM_CheckBox( self.pmGroupBox5,
text = "Display labels",
widgetColumn = 0,
state = Qt.Unchecked,
setAsDefault = True,
spanWidth = True )
originChoices = [
'Lower left (default)', 'Upper left', 'Lower right', 'Upper right'
]
self.gpOriginComboBox = \
PM_ComboBox( self.pmGroupBox5 ,
label = "Origin:",
choices = originChoices,
setAsDefault = True )
positionChoices = ['Origin axes (default)', 'Plane perimeter']
self.gpPositionComboBox = \
PM_ComboBox( self.pmGroupBox5 ,
label = "Position:",
choices = positionChoices,
setAsDefault = True)
self._showHideGPWidgets()
if env.prefs[PlanePM_showGridLabels_prefs_key]:
self.displayLabels = True
self.gpOriginComboBox.setEnabled(True)
self.gpPositionComboBox.setEnabled(True)
else:
self.displayLabels = False
self.gpOriginComboBox.setEnabled(False)
self.gpPositionComboBox.setEnabled(False)
return
def _loadGroupBox3(self, pmGroupBox):
"""
Load widgets in group box.
"""
colorChoices = [
'Chunk', 'Chain', 'Order', 'Hydropathy', 'Polarity', 'Acidity',
'Size', 'Character', 'Number of contacts',
'Secondary structure type', 'Secondary structure order',
'B-factor', 'Occupancy', 'Custom'
]
self.proteinComponentComboBox = \
PM_ComboBox( pmGroupBox,
label = "Color by:",
choices = colorChoices,
setAsDefault = True)
colorList = [
orange, yellow, red, magenta, cyan, blue, white, black, gray
]
colorNames = [
"Orange(default)", "Yellow", "Red", "Magenta", "Cyan", "Blue",
"White", "Black", "Other color..."
]
self.customColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = colorList,
colorNames = colorNames,
label = "Custom:",
color = orange,
setAsDefault = True)
colorChoices1 = [
'Same as main color', 'Chunk', 'Chain', 'Order', 'Hydropathy',
'Polarity', 'Acidity', 'Size', 'Character', 'Number of contacts',
'Secondary structure type', 'Secondary structure order',
'B-factor', 'Occupancy', 'Custom'
]
self.proteinAuxComponentComboBox = \
PM_ComboBox( pmGroupBox,
label = "Aux:",
choices = colorChoices1,
setAsDefault = True)
colorListAux = [
orange, yellow, red, magenta, cyan, blue, white, black, gray
]
colorNamesAux = [
"Orange(default)", "Yellow", "Red", "Magenta", "Cyan", "Blue",
"White", "Black", "Other color..."
]
self.auxColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = colorListAux,
colorNames = colorNamesAux,
label = "Custom aux:",
color = gray,
setAsDefault = True)
self.discColorCheckBox = \
PM_CheckBox( pmGroupBox,
text = "Discretize colors",
setAsDefault = True
)
colorListHelix = [
red, yellow, gray, magenta, cyan, blue, white, black, orange
]
colorNamesHelix = [
"Red(default)", "Yellow", "Gray", "Magenta", "Cyan", "Blue",
"White", "Black", "Other color..."
]
self.helixColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = colorListHelix,
colorNames = colorNamesHelix,
label = "Helix:",
color = red,
setAsDefault = True)
colorListStrand = [
cyan, yellow, gray, magenta, red, blue, white, black, orange
]
colorNamesStrand = [
"Cyan(default)", "Yellow", "Gray", "Magenta", "Red", "Blue",
"White", "Black", "Other color..."
]
self.strandColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = colorListStrand,
colorNames = colorNamesStrand,
label = "Strand:",
color = cyan,
setAsDefault = True)
self.coilColorComboBox = \
PM_ColorComboBox(pmGroupBox,
colorList = colorListAux,
colorNames = colorNamesAux,
label = "Coil:",
color = orange,
setAsDefault = True)
def _loadColorChooser(self, pmGroupBox):
self._colorChooser = PM_ColorComboBox(pmGroupBox)
def _loadGroupBox2(self, pmGroupBox):
"""
Load widgets in group box.
"""
self.lightComboBox = \
PM_ComboBox( pmGroupBox,
choices = ["1", "2", "3"],
label = "Light:")
self.enableLightCheckBox = \
PM_CheckBox( pmGroupBox, text = "On" )
self.lightColorComboBox = \
PM_ColorComboBox(pmGroupBox)
self.ambientDoubleSpinBox = \
PM_DoubleSpinBox(pmGroupBox,
maximum = 1.0,
minimum = 0.0,
decimals = 2,
singleStep = .1,
label = "Ambient:")
self.diffuseDoubleSpinBox = \
PM_DoubleSpinBox(pmGroupBox,
maximum = 1.0,
minimum = 0.0,
decimals = 2,
singleStep = .1,
label = "Diffuse:")
self.specularDoubleSpinBox = \
PM_DoubleSpinBox(pmGroupBox,
maximum = 1.0,
minimum = 0.0,
decimals = 2,
singleStep = .1,
label = "Specular:")
self.positionGroupBox = \
PM_GroupBox( pmGroupBox,
title = "Position:")
self.xDoubleSpinBox = \
PM_DoubleSpinBox(self.positionGroupBox,
maximum = 1000,
minimum = -1000,
decimals = 1,
singleStep = 10,
label = "X:")
self.yDoubleSpinBox = \
PM_DoubleSpinBox(self.positionGroupBox,
maximum = 1000,
minimum = -1000,
decimals = 1,
singleStep = 10,
label = "Y:")
self.zDoubleSpinBox = \
PM_DoubleSpinBox(self.positionGroupBox,
maximum = 1000,
minimum = -1000,
decimals = 1,
singleStep = 10,
label = "Z:")
return