def index_pangenome_test(self, mock_wsa):
iu = MiscIndexer(self.cfg)
iu.ws.get_objects2.return_value = self.pangenome
res = iu.pangenome_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('data', res)
res = iu.pangenomeorthologyfamily_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('features', res)
def index_assembly_test(self, mock_wsa):
iu = MiscIndexer(self.cfg)
iu.ws.get_objects2.return_value = self.assemblyobj
res = iu.assembly_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('data', res)
res = iu.assemblycontig_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('features', res)
def index_pairedend_test(self, mock_wsa):
iu = MiscIndexer(self.cfg)
iu.ws.get_objects2.return_value = self.pairedend
res = iu.pairedend_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('data', res)
def index_ontologyterm_test(self, mock_wsa):
iu = MiscIndexer(self.cfg)
iu.ws.get_objects2.return_value = self.ontology
res = iu.ontologyterm_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('features', res)
def index_narrative_test(self, mock_wsa):
iu = MiscIndexer(self.cfg)
iu.ws.get_objects2.return_value = self.narobj
res = iu.narrative_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('data', res)
def index_rnaseq_test(self, mock_wsa):
iu = MiscIndexer(self.cfg)
iu.ws.get_objects2.return_value = self.rnaseqsampleset
res = iu.rnaseqsampleset_index(self.upa)
self.assertIsNotNone(res)
self.assertIn('data', res)