def variables():
    v = ArgumentParser()
    v.sequencepath = os.path.join(testpath, 'testdata')
    v.referencefilepath = os.path.join(v.sequencepath, 'databases')
    v.customsamplesheet = os.path.join(v.sequencepath, 'SampleSheet.csv')
    v.debug = True
    v.numreads = 2
    v.kmerrange = '21'
    v.preprocess = False
    v.basicassembly = True
    v.threads = multiprocessing.cpu_count()
    v.startingtime = time()
    v.commit = b''
    v.homepath = scriptpath
    return v
Beispiel #2
0
def variables():
    v = ArgumentParser()
    v.sequencepath = os.path.join(testpath, 'testdata')
    v.referencefilepath = os.path.join(v.sequencepath, 'databases')
    v.customsamplesheet = os.path.join(v.sequencepath, 'SampleSheet.csv')
    v.debug = True
    v.numreads = 2
    v.kmerrange = '21'
    v.preprocess = False
    v.basicassembly = True
    v.threads = multiprocessing.cpu_count()
    v.startingtime = time()
    v.commit = b''
    v.homepath = scriptpath
    return v