def test_distance_matrix_permutation_test_alt_stat(self):
def fake_stat_test(a, b, tails=None):
return 42., 42.
m = array([[0, 1, 3], [1, 2, 4], [3, 4, 5]])
self.assertEqual(distance_matrix_permutation_test(m,\
[(0,0),(0,1),(0,2)],n=5,f=fake_stat_test),(42.,42.,0.))
def test_distance_matrix_permutation_test_return_scores(self):
""" return_scores=True functions as expected """
# use alt statistical test to make results simple
def fake_stat_test(a,b,tails=None):
return 42.,42.
m = array([[0,1,3],[1,2,4],[3,4,5]])
self.assertEqual(distance_matrix_permutation_test(\
m,[(0,0),(0,1),(0,2)],\
n=5,f=fake_stat_test,return_scores=True),(42.,42.,0.,[42.]*5))
def test_distance_matrix_permutation_test_return_scores(self):
""" return_scores=True functions as expected """
# use alt statistical test to make results simple
def fake_stat_test(a, b, tails=None):
return 42., 42.
m = array([[0, 1, 3], [1, 2, 4], [3, 4, 5]])
self.assertEqual(distance_matrix_permutation_test(\
m,[(0,0),(0,1),(0,2)],\
n=5,f=fake_stat_test,return_scores=True),(42.,42.,0.,[42.]*5))
def test_distance_matrix_permutation_test_alt_stat(self):
def fake_stat_test(a,b,tails=None):
return 42.,42.
m = array([[0,1,3],[1,2,4],[3,4,5]])
self.assertEqual(distance_matrix_permutation_test(m,\
[(0,0),(0,1),(0,2)],n=5,f=fake_stat_test),(42.,42.,0.))
def make_result_list(*args, **kwargs):
return [distance_matrix_permutation_test(*args)[2] for i in range(10)]
def make_result_list(*args, **kwargs):
return [distance_matrix_permutation_test(*args,**kwargs)[2] \
for i in range(10)]
