def __getitem__(self, index):
"""
Create an Affine coordinate map with into self.coords with
slices created as in np.mgrid/np.ogrid.
"""
dtype = self.coordmap.input_coords.coord_dtype
results = [a.ravel().astype(dtype) for a in np.ogrid[index]]
if len(results) != len(self.coordmap.input_coords.coord_names):
raise ValueError('the number of slice objects must match '
'the number of input dimensions')
cmaps = []
for i, result in enumerate(results):
if result.shape[0] > 1:
step = result[1] - result[0]
else:
step = 0
start = result[0]
cmaps.append(Affine(
np.array([[step, start],[0,1]], dtype=dtype),
CoordinateSystem(['i%d' % i], coord_dtype=dtype),
CoordinateSystem([self.coordmap.input_coords.coord_names[i]],
coord_dtype=dtype)))
shape = [result.shape[0] for result in results]
cmap = cmap_product(*cmaps)
return ArrayCoordMap(compose(self.coordmap, cmap), tuple(shape))
def __getitem__(self, index):
"""
Create an AffineTransform coordinate map with into self.coords with
slices created as in np.mgrid/np.ogrid.
"""
dtype = self.coordmap.function_domain.coord_dtype
results = [a.ravel().astype(dtype) for a in np.ogrid[index]]
if len(results) != len(self.coordmap.function_domain.coord_names):
raise ValueError('the number of slice objects must match '
'the number of input dimensions')
cmaps = []
for i, result in enumerate(results):
if result.shape[0] > 1:
step = result[1] - result[0]
else:
step = 0
start = result[0]
cmaps.append(AffineTransform(
CoordinateSystem(['i%d' % i], coord_dtype=dtype),
CoordinateSystem([self.coordmap.function_domain.coord_names[i]],
coord_dtype=dtype),
np.array([[step, start],[0,1]], dtype=dtype)))
shape = [result.shape[0] for result in results]
cmap = cmap_product(*cmaps)
# Identify the origin in the range of cmap
# with the origin in the domain of self.coordmap
cmap = shifted_range_origin(cmap,
np.zeros(cmap.ndims[1]),
self.coordmap.function_domain.name)
return ArrayCoordMap(compose(self.coordmap, cmap), tuple(shape))
def _slice(coordmap, shape, *slices):
"""
Slice a 'voxel' CoordinateMap's input_coords with slices. A
'voxel' CoordinateMap is interpreted as a coordmap having a shape.
"""
if len(slices) < coordmap.ndim[0]:
slices = (list(slices) +
[slice(None,None,None)] * (coordmap.ndim[0] - len(slices)))
ranges = [np.arange(s) for s in shape]
cmaps = []
keep_in_output = []
dtype = coordmap.input_coords.coord_dtype
newshape = []
for i, __slice in enumerate(slices):
ranges[i] = ranges[i][__slice]
try:
start = ranges[i][0]
except IndexError:
try:
start = int(ranges[i])
except TypeError:
raise ValueError('empty slice for dimension %d, '
'coordinate %s' %
(i, coordmap.input_coords.coord_names[i]))
if ranges[i].shape == ():
step = 0
start = int(ranges[i])
l = 1
elif ranges[i].shape[0] > 1:
start = ranges[i][0]
step = ranges[i][1] - ranges[i][0]
l = ranges[i].shape[0]
keep_in_output.append(i)
else:
start = ranges[i][0]
step = 0.
l = 1
keep_in_output.append(i)
if step > 1:
name = coordmap.input_coords.coord_names[i] + '-slice'
else:
name = coordmap.input_coords.coord_names[i]
cmaps.append(Affine(
np.array([[step, start],[0,1]], dtype=dtype),
CoordinateSystem([name], coord_dtype=dtype),
CoordinateSystem([coordmap.input_coords.coord_names[i]])))
if i in keep_in_output:
newshape.append(l)
slice_cmap = cmap_product(*cmaps)
# Reduce the size of the matrix
innames = slice_cmap.input_coords.coord_names
inmat = []
input_coords = CoordinateSystem(
[innames[i] for i in keep_in_output],
'input-slice',
coordmap.input_coords.coord_dtype)
A = np.zeros((coordmap.ndim[0]+1, len(keep_in_output)+1))
for j, i in enumerate(keep_in_output):
A[:,j] = slice_cmap.affine[:,i]
A[:,-1] = slice_cmap.affine[:,-1]
A = A.astype(input_coords.coord_dtype)
slice_cmap = Affine(A, input_coords, coordmap.input_coords)
return ArrayCoordMap(compose(coordmap, slice_cmap), tuple(newshape))