Python Tree.get_midpoint_outgroup Beispiele

Beispiel #1

Datei: get_midpoint_outgroup.py Projekt: tarah28/ete

#                    \--------|
#                             |                    /-neqsc
#                             |                   |
#                             |                   |                              /-waxkv
#                             |          /--------|                    /--------|
#                             |         |         |          /--------|          \-djeoh
#                             |         |         |         |         |
#                             |         |          \--------|          \-exmsn
#                              \--------|                   |
#                                       |                   |          /-udspq
#                                       |                    \--------|
#                                       |                              \-buxpw
#                                       |
#                                        \-rkzwd
# Calculate the midpoint node
R = t.get_midpoint_outgroup()
# and set it as tree outgroup
t.set_outgroup(R)
print t
#                              /-opben
#                             |
#                    /--------|                    /-xoryn
#                   |         |          /--------|
#                   |         |         |         |          /-wdima
#                   |          \--------|          \--------|
#          /--------|                   |                    \-qxovz
#         |         |                   |
#         |         |                    \-isngq
#         |         |
#         |         |          /-xyewk
#         |          \--------|

Beispiel #2

Datei: get_midpoint_outgroup.py Projekt: MikeTrizna/ete

#                    \--------|
#                             |                    /-neqsc
#                             |                   |
#                             |                   |                              /-waxkv
#                             |          /--------|                    /--------|
#                             |         |         |          /--------|          \-djeoh
#                             |         |         |         |         |
#                             |         |          \--------|          \-exmsn
#                              \--------|                   |
#                                       |                   |          /-udspq
#                                       |                    \--------|
#                                       |                              \-buxpw
#                                       |
#                                        \-rkzwd
# Calculate the midpoint node
R = t.get_midpoint_outgroup()
# and set it as tree outgroup
t.set_outgroup(R)
print t
#                              /-opben
#                             |
#                    /--------|                    /-xoryn
#                   |         |          /--------|
#                   |         |         |         |          /-wdima
#                   |          \--------|          \--------|
#          /--------|                   |                    \-qxovz
#         |         |                   |
#         |         |                    \-isngq
#         |         |
#         |         |          /-xyewk
#         |          \--------|