Beispiel #1
0
    tree_panel_html = '<div id="tree_panel">' + search_form + html_features + buttons + '</div>'

    # Now we render the tree into image and get the HTML that handles it
    tree_html = application._get_tree_img(treeid = treeid)

    # Let's return enriched HTML
    return tree_panel_html + tree_html

# ==============================================================================
#
# Main WSGI Application
#
# ==============================================================================

# Create a basic ETE WebTreeApplication
application = WebTreeApplication()

# Set your temporal dir to allow web user to generate files. This two
# paths should point to the same place, one using the absolute path in
# your system, and the other the URL to access the same
# directory. Note that the referred directory must be writable by the
# webserver.
#application.CONFIG["temp_dir"] = "/home/services/web/ete.cgenomics.org/webplugin/tmp/"
application.CONFIG["temp_dir"] = "/var/www/etetoolkit.org/webplugin/tmp/"
application.CONFIG["temp_url"] = "/webplugin/tmp/" # Relative to web site Document Root

# Set the DISPLAY port that ETE should use to draw pictures. You will
# need a X server installed in your server and allow webserver user to
# access the display. If the X server is started by a different user
# and www-data (usally the apache user) cannot access display, try
# modifiying DISPLAY permisions by executing "xhost +"
Beispiel #2
0
    # Now we render the tree into image and get the HTML that handles it
    tree_html = application._get_tree_img(treeid=treeid)

    # Let's return enriched HTML
    return tree_panel_html + tree_html


# ==============================================================================
#
# Main WSGI Application
#
# ==============================================================================

# Create a basic ETE WebTreeApplication
application = WebTreeApplication()

# Set your temporal dir to allow web user to generate files. This two
# paths should point to the same place, one using the absolute path in
# your system, and the other the URL to access the same
# directory. Note that the referred directory must be writable by the
# webserver.
#application.CONFIG["temp_dir"] = "/home/services/web/ete.cgenomics.org/webplugin/tmp/"
application.CONFIG["temp_dir"] = "/var/www/etetoolkit.org/webplugin/tmp/"
application.CONFIG[
    "temp_url"] = "/webplugin/tmp/"  # Relative to web site Document Root

# Set the DISPLAY port that ETE should use to draw pictures. You will
# need a X server installed in your server and allow webserver user to
# access the display. If the X server is started by a different user
# and www-data (usally the apache user) cannot access display, try
Beispiel #3
0
    # Now we render the tree into image and get the HTML that handles it
    tree_html = application._get_tree_img(treeid=treeid)

    # Let's return enriched HTML
    return tree_panel_html + tree_html


# ==============================================================================
#
# Main WSGI Application
#
# ==============================================================================

# Create a basic ETE WebTreeApplication
application = WebTreeApplication()

# Set your temporal dir to allow web user to generate files. This two
# paths should point to the same place, one using the absolute path in
# your system, and the other the URL to access the same
# directory. Note that the referred directory must be writable by the
# webserver.
#application.CONFIG["temp_dir"] = "/home/services/web/ete.cgenomics.org/webpluin/tmp/"
application.CONFIG["temp_dir"] = "/var/www/webplugin/tmp/"
application.CONFIG[
    "temp_url"] = "/webplugin/tmp/"  # Relative to web site Document Root

# Set the DISPLAY port that ETE should use to draw pictures. You will
# need a X server installed in your server and allow webserver user to
# access the display. If the X server is started by a different user
# and www-data (usally the apache user) cannot access display, try