def handle_job_metrics(self, line, job):
job_metrics = summarize_job_metrics(self.trans, job)
metrics_by_plugin = {}
for job_metric in job_metrics:
plugin = job_metric["plugin"]
if plugin not in metrics_by_plugin:
metrics_by_plugin[plugin] = {}
metrics_by_plugin[plugin][job_metric["title"]] = job_metric["value"]
markdown = ""
for metric_plugin, metrics_for_plugin in metrics_by_plugin.items():
markdown += f"**{metric_plugin}**\n\n"
markdown += "| | |\n|---|--|\n"
for title, value in metrics_for_plugin.items():
markdown += f"| {title} | {value} |\n"
return (markdown, True)
def handle_job_metrics(self, line, job):
job_metrics = summarize_job_metrics(self.trans, job)
metrics_by_plugin = OrderedDict()
for job_metric in job_metrics:
plugin = job_metric["plugin"]
if plugin not in metrics_by_plugin:
metrics_by_plugin[plugin] = OrderedDict()
metrics_by_plugin[plugin][job_metric["title"]] = job_metric["value"]
markdown = ""
for metric_plugin, metrics_for_plugin in metrics_by_plugin.items():
markdown += "**%s**\n\n" % metric_plugin
markdown += "| | |\n|---|--|\n"
for title, value in metrics_for_plugin.items():
markdown += "| %s | %s |\n" % (title, value)
return (markdown, True)
def metrics(self, trans, **kwd):
"""
* GET /api/jobs/{job_id}/metrics
* GET /api/datasets/{dataset_id}/metrics
Return job metrics for specified job. Job accessibility checks are slightly
different than dataset checks, so both methods are available.
:type job_id: string
:param job_id: Encoded job id
:type dataset_id: string
:param dataset_id: Encoded HDA or LDDA id
:type hda_ldda: string
:param hda_ldda: hda if dataset_id is an HDA id (default), ldda if
it is an ldda id.
:rtype: list
:returns: list containing job metrics
"""
job = self.__get_job(trans, **kwd)
return summarize_job_metrics(trans, job)
def show(self, trans, id, **kwd):
"""
show( trans, id )
* GET /api/jobs/{id}:
return jobs for current user
:type id: string
:param id: Specific job id
:type full: boolean
:param full: whether to return extra information
:rtype: dictionary
:returns: dictionary containing full description of job data
"""
job = self.__get_job(trans, id)
is_admin = trans.user_is_admin
job_dict = self.encode_all_ids(
trans, job.to_dict('element', system_details=is_admin), True)
full_output = util.asbool(kwd.get('full', 'false'))
if full_output:
job_dict.update(
dict(tool_stdout=job.tool_stdout,
tool_stderr=job.tool_stderr,
job_stdout=job.job_stdout,
job_stderr=job.job_stderr,
stderr=job.stderr,
stdout=job.stdout,
job_messages=job.job_messages))
if is_admin:
if job.user:
job_dict['user_email'] = job.user.email
else:
job_dict['user_email'] = None
job_dict['job_metrics'] = summarize_job_metrics(trans, job)
return job_dict