def test_comparator_numerical_model_needles_only_succeeds():
left = """
<simulationDefinition>
<numericalModel>
<needles>
<needle index='12388' class='solid-boundary' file='library:cryo-two-part-cylinder-1'>
<parameters>
<parameter name="NEEDLE_TIP_LOCATION" value="[-1, 0.3, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_ENTRY_LOCATION" value="[-1, 0.5, 1.2]" type="array(float)"/>
</parameters>
</needle>
</needles>
</numericalModel>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<numericalModel>
<needles>
<needle index='12388' class='solid-boundary' file='library:cryo-two-part-cylinder-1'>
<parameters>
<parameter name="NEEDLE_TIP_LOCATION" value="[-1, 0.3, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_ENTRY_LOCATION" value="[-1, 0.5, 1.2]" type="array(float)"/>
</parameters>
</needle>
</needles>
</numericalModel>
</simulationDefinition>
"""
comparator = Comparator(left, right)
assert comparator.equal()
def test_comparator_numerical_models_only_succeeds():
left = """
<simulationDefinition>
<numericalModel>
<needles/>
<regions/>
<definition>
A Definition
</definition>
</numericalModel>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<numericalModel>
<regions/>
<needles/>
<definition>
A Definition
</definition>
</numericalModel>
</simulationDefinition>
"""
comparator = Comparator(left, right)
assert comparator.equal()
def test_comparator_numerical_model_regions_only_fails():
left = """
<simulationDefinition>
<numericalModel>
<regions>
<region id='organ-0' name='organ' format="surface" input="something/kidney.vtp" groups='["boundary"]'/>
</regions>
</numericalModel>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<numericalModel>
<regions>
<region id='organ-0' name="organ" format='surface' input="something/kidney.vtk" groups='["boundary", "no-flux"]'/>
<region id='organ-1' name="organ" format='surface' input="something/kidney.vtk" groups='["boundary", "no-flux"]'/>
</regions>
</numericalModel>
</simulationDefinition>
"""
comparator = Comparator(left, right)
messages = [
'Numerical Model: this has no region organ-1',
'Region: for ID organ-0, input fields differ something/kidney.vtp // something/kidney.vtk',
'Region: this (organ-0) has no group no-flux'
]
assert Counter(messages) == Counter(comparator.diff())
def test_comparator_algorithms_only_fails():
left = """
<simulationDefinition>
<algorithms>
<algorithm result="CONSTANT_KIWI">
<arguments>
<argument name="Time" />
</arguments>
<content>
</content>
</algorithm>
<algorithm result="CONSTANT_PASSIONFRUIT">
<arguments>
<argument name="Temperature" />
<argument name="Time"/>
</arguments>
<content>
function CONSTANT_PASSIONFRUIT( Temperature, Time )
{
_CONSTANT_PASSIONFRUIT = Temperature * Time;
}
</content>
</algorithm>
</algorithms>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<algorithms>
<algorithm result="CONSTANT_KIWI ">
<arguments>
<argument name="time" />
<argument name="Temperature" />
</arguments>
<content>
</content>
</algorithm>
<algorithm result="CONSTANT_PASSIONFRUIT">
<arguments>
<argument name="Time"/>
</arguments>
<content>
function CONSTANT_PASSIONFRUIT( Temperature, Time )
{
_CONSTANT_PASSIONFRUIT = Temperature * Time;
}
</content>
</algorithm>
</algorithms>
</simulationDefinition>
"""
comparator = Comparator(left, right)
messages = [
"Algorithm: CONSTANT_PASSIONFRUIT has no argument Temperature",
"Left definition has no algorithm 'CONSTANT_KIWI '",
"Right definition has no algorithm 'CONSTANT_KIWI'"
]
assert Counter(messages) == Counter(comparator.diff())
def test_comparator_algorithms_only_succeeds():
left = """
<simulationDefinition>
<algorithms>
<algorithm result="CONSTANT_KIWI">
<arguments>
<argument name="Time" />
</arguments>
<content>
</content>
</algorithm>
<algorithm result="CONSTANT_PASSIONFRUIT">
<arguments>
<argument name="Temperature" />
<argument name="Time"/>
</arguments>
<content>
function CONSTANT_PASSIONFRUIT( Temperature, Time )
{
_CONSTANT_PASSIONFRUIT = Temperature * Time;
}
</content>
</algorithm>
</algorithms>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<algorithms>
<algorithm result="CONSTANT_KIWI">
<arguments>
<argument name="Time" />
</arguments>
<content>
</content>
</algorithm>
<algorithm result="CONSTANT_PASSIONFRUIT">
<arguments>
<argument name="Temperature" />
<argument name="Time" />
</arguments>
<content>
function CONSTANT_PASSIONFRUIT( Temperature, Time )
{
_CONSTANT_PASSIONFRUIT = Temperature * Time;
}
</content>
</algorithm>
</algorithms>
</simulationDefinition>
"""
comparator = Comparator(left, right)
assert comparator.equal()
def test_comparator_transferrer_only_succeeds():
both = """
<simulationDefinition>
<transferrer class="http">
<url>http://example.com</url>
</transferrer>
</simulationDefinition>
"""
comparator = Comparator(both, both)
assert comparator.equal()
def test_comparator_numerical_model_needles_only_fails():
left = """
<simulationDefinition>
<numericalModel>
<needles>
<needle index='12398' class='boundary' file='library:cryo-two-part-cylinder'>
<parameters>
<parameter name="NEEDLE_TIP_LOCATION" value="[-1,0.3, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_ENTRY_LOC" value="[-1, 0.5, 1.2]" type="array(float)"/>
</parameters>
</needle>
<needle index='12388' class='solid-boundary' file='library:cryo-two-part-cylinder-1'>
<parameters>
<parameter name="NEEDLE_TIP_LOCATION" value="[-1, 0.3, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_ENTRY_LOCATION" value="[-1, 0.5, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_TEMPERATURE" value="100" type="float"/>
</parameters>
</needle>
</needles>
</numericalModel>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<numericalModel>
<needles>
<needle index='12388' class='boundary' file='library:cryo-two-part-cylinder'>
<parameters>
<parameter name="NEEDLE_TIP_LOCATION" value="[-1,0.3, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_ENTRY_LOC" value="[-1, 0.5, 1.2]" type="array(float)"/>
<parameter name="NEEDLE_TEMPERATURE" value="373" type="float"/>
</parameters>
</needle>
</needles>
</numericalModel>
</simulationDefinition>
"""
comparator = Comparator(left, right)
messages = [
'Needle: this (12398) has no parameter NEEDLE_TEMPERATURE',
'Numerical Model: this has different needle count than that'
]
assert Counter(messages) == Counter(comparator.diff())
def test_comparator_parameters_only_succeeds():
left = """
<simulationDefinition>
<parameters>
<parameter name="BANANA" value="5.0" type="float"/>
<parameter name="PEAR" value="3" type="int"/>
</parameters>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<parameters>
<parameter name="PEAR" value="3" type="int"/>
<parameter name="BANANA" value="5.00" type="float"/>
</parameters>
</simulationDefinition>
"""
comparator = Comparator(left, right)
assert comparator.equal()
def test_comparator_transferrer_only_fails():
left = """
<simulationDefinition>
<transferrer class="http">
<url>http://example.com</url>
</transferrer>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<transferrer class="ftp">
<url>ftp://example.com</url>
</transferrer>
</simulationDefinition>
"""
comparator = Comparator(left, right)
messages = [
"Transferrer: classes differ - http // ftp",
"Transferrer: URLs differ - http://example.com // ftp://example.com"
]
assert Counter(messages) == Counter(comparator.diff())
def test_comparator_numerical_model_regions_only_succeeds():
left = """
<simulationDefinition>
<numericalModel>
<regions>
<region id='organ-0' name='organ' format="surface" input="something/kidney.vtp" groups='["boundary"]'/>
</regions>
</numericalModel>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<numericalModel>
<regions>
<region id='organ-0' name='organ' format="surface" input="something/kidney.vtp" groups='["boundary"]'/>
</regions>
</numericalModel>
</simulationDefinition>
"""
comparator = Comparator(left, right)
assert comparator.equal()
def test_comparator_parameters_only_fails():
left = """
<simulationDefinition>
<parameters>
<parameter name="BANANA" value="5.0" type="float"/>
<parameter name="PEAR" value="3" type="float"/>
</parameters>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<parameters>
<parameter name="PEAR" value="3" type="int"/>
<parameter name="BANANA" value="5.01" type="float"/>
</parameters>
</simulationDefinition>
"""
comparator = Comparator(left, right)
messages = [
"Parameter BANANA: values differ - 5.0 // 5.01",
"Parameter PEAR: types differ - float // int"
]
assert Counter(messages) == Counter(comparator.diff())
def test_comparator_numerical_models_only_fails():
left = """
<simulationDefinition>
<numericalModel>
<definition>
A Definition
</definition>
</numericalModel>
</simulationDefinition>
"""
right = """
<simulationDefinition>
<numericalModel>
<regions/>
<needles/>
</numericalModel>
</simulationDefinition>
"""
comparator = Comparator(left, right)
messages = [
"Numerical Model: that has no definition",
]
assert Counter(messages) == Counter(comparator.diff())
def test_comparator_trivial_fails():
with pytest.raises(XMLSyntaxError):
Comparator("", "")
def test_comparator_trivial_xml_succeeds():
comparator = Comparator("<simulationDefinition/>",
"<simulationDefinition/>")
assert comparator.equal()
