def test(self):
el = self.el
br = self.br
el_path = self.el_path
br_path = self.br_path
### four different ways of doing analyses:
#
# execute paircomp
#
outname = 'el-br-0.5.p.cmp'
os.system('rm %s >& /dev/null' % (outname,))
os.system('%s/paircomp %s %s 20 .5 %s >& /dev/null' % \
(bindir, self.el_path, self.br_path, outname))
p_cmp = paircomp.parse_paircomp(open(outname).read(),
len(el), len(br), 20)
os.system('rm %s >& /dev/null' % (outname,))
#
# execute seqcomp
#
outname = 'el-br-0.5.s.cmp'
os.system('rm %s >& /dev/null' % (outname,))
os.system('%s/seqcomp %s %s 20 10 noxml %s >& /dev/null' % \
(bindir, el_path, br_path, outname))
s_cmp = paircomp.parse_seqcomp(open(outname).read(),
len(el), len(br), 20)
os.system('rm %s >& /dev/null' % (outname,))
#
# & use the python interface.
#
rolling_cmp = self.cmp
simple_cmp = paircomp.do_simple_nxn_compare(el, br, 20, .5)
## also load in an old analysis for regression testing
old_paircomp = paircomp.parse_paircomp(open('%s/orig-el-br.txt' % \
(thisdir,)).read(),
len(el), len(br), 20)
## check to make sure they all return the same result!
print 'Testing equality of internal vs external analyses...',
assert p_cmp == s_cmp
assert p_cmp == simple_cmp
assert p_cmp == rolling_cmp
assert p_cmp == old_paircomp
def test_round_trip(self):
"round-trip both formats"
el, br = self.el, self.br
cmp = self.cmp
print 'Testing save/load round-trip...'
cmp.save('simple.cmp')
simple_cmp_2 = paircomp.parse_paircomp(open('simple.cmp').read(),
len(el), len(br), 20)
assert cmp == simple_cmp_2
os.system('rm simple.cmp')
cmp.save_as_seqcomp('simple_seqcomp.cmp')
r = open('simple_seqcomp.cmp').read()
simple_cmp_3 = paircomp.parse_seqcomp(r, len(el), len(br), 20)
assert cmp == simple_cmp_3
#! /usr/bin/env python import sys from paircomp import parse_seqcomp cmp_txt = open(sys.argv[1]).read() cmp = parse_seqcomp(cmp_txt) cmp.save(sys.argv[2])
