def run_main(ds_xml, reference_set_xml, output_json, max_nchunks, output_dir):
CU.write_alignmentset_chunks_to_file(output_json,
ds_xml,
reference_set_xml,
max_nchunks,
output_dir,
"chunk_alignmentset",
FileTypes.DS_ALIGN.ext)
return 0
def _args_run_chunk_alignmentset(args):
return CU.write_alignmentset_chunks_to_file(args.chunk_report_json,
args.alignmentset,
args.fasta,
args.max_total_chunks,
args.output_dir,
"chunk_alignmentset", 'xml')
def _args_run_chunk_alignmentset(args):
return CU.write_alignmentset_chunks_to_file(args.chunk_report_json,
args.alignmentset, args.fasta,
args.max_total_chunks,
args.output_dir,
"chunk_alignmentset",
FileTypes.DS_ALIGN.ext)
def run_main(ds_xml, reference_set_xml, output_json, max_nchunks, output_dir):
CU.write_alignmentset_chunks_to_file(output_json, ds_xml,
reference_set_xml, max_nchunks,
output_dir, "chunk_alignmentset",
FileTypes.DS_ALIGN.ext)
return 0
def run_main(ds_xml, reference_set_xml, output_json, max_nchunks, output_dir):
CU.write_alignmentset_chunks_to_file(
output_json, ds_xml, reference_set_xml, max_nchunks, output_dir, "chunk_alignmentset", "xml"
)
return 0
def run_main(ds_xml, reference_set_xml, output_json, max_nchunks, output_dir):
CU.write_alignmentset_chunks_to_file(output_json, ds_xml,
reference_set_xml, max_nchunks,
output_dir, "chunk_alignmentset",
'xml')
return 0
