def run_locally(self, steps=None, **kwargs):
"""A convenience method to run the same result as a SLURM job
but locally in a non-blocking way."""
self.slurm_job = LoggedJobSLURM(self.command(steps),
base_dir = self.parent.p.logs_dir,
modules = self.modules,
**kwargs)
self.slurm_job.run_locally()
def run_slurm(self, steps=None, **kwargs):
"""Run the steps via the SLURM queue."""
# Optional extra SLURM parameters #
params = self.extra_slurm_params
params.update(kwargs)
# Mandatory extra SLURM parameters #
if 'time' not in params: params['time'] = self.default_time
if 'job_name' not in params: params['job_name'] = self.job_name
if 'email' not in params: params['email'] = None
if 'dependency' not in params: params['dependency'] = 'singleton'
# Send it #
self.slurm_job = LoggedJobSLURM(self.command(steps),
base_dir = self.parent.p.logs_dir,
modules = self.modules,
**params)
# Return the Job ID #
return self.slurm_job.run()