Python Solver.set_tspan Beispiele

Beispiel #1

Datei: run_mapk_mcmc.py Projekt: bgyori/erk_invitro

def sim_experiment(model, exp, pd=None, solver=None):
    if pd is None:
        pd = {}
    pd['ERK_0'] = exp.ERKtot * exp.ERK[0]
    pd['ERKpT_0'] = exp.ERKtot * exp.ERKpT[0]
    pd['ERKpY_0'] = exp.ERKtot * exp.ERKpY[0]
    pd['ERKpTpY_0'] = exp.ERKtot * exp.ERKpTpY[0]
    pd['MEK_0'] = exp.MEKtot
    pd['MKP_0'] = exp.MKPtot

    if solver is None:
        Solver._use_inline = True
        solver = Solver(model, exp.ts, use_analytic_jacobian=True)
    else:
        solver.set_tspan(exp.ts)
    solver.run(pd)
    return solver.yobs

Beispiel #2

def sim_experiment(model, exp, pd=None, solver=None):
    if pd is None:
        pd = {}
    pd['ERK_0'] = exp.ERKtot * exp.ERK[0]
    pd['ERKpT_0'] = exp.ERKtot * exp.ERKpT[0]
    pd['ERKpY_0'] = exp.ERKtot * exp.ERKpY[0]
    pd['ERKpTpY_0'] = exp.ERKtot * exp.ERKpTpY[0]
    pd['MEK_0'] = exp.MEKtot
    pd['MKP_0'] = exp.MKPtot

    if solver is None:
        Solver._use_inline = True
        solver = Solver(model, exp.ts, use_analytic_jacobian=True)
    else:
        solver.set_tspan(exp.ts)
    solver.run(pd)
    return solver.yobs