def search(args):
"""
Return the sequence provided a coordinate
"""
# Validate the coordinates
tools.validate_coordinates(args['start'], args['end'])
# Build the XML path query
query_xml = tools.create_xml(args['chromosome'])
# Request the sequence data
tools.get_sequence_data(args['start'], args['end'], args['chromosome'], query_xml, args['flank'])
def search(args):
"""
Return the sequence of a gene
"""
# Get the gene coordinates
coordinate = tools.get_gene_data(args["identifier"])
if not coordinate:
raise Exception(
"Identifier '%s' could not be found! Please make sure to use a valid AGI locus identifier."
% args["identifier"]
)
# Validate the coordinates
tools.validate_coordinates(coordinate["start"], coordinate["end"])
# Build the XML path query
query_xml = tools.create_xml(coordinate["chromosome"])
# Request the sequence data
tools.get_sequence_data(coordinate["start"], coordinate["end"], coordinate["chromosome"], query_xml, args["flank"])