def test_retrieve_uniprot_matches_reference():
xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN')
xml_root = etree.fromstring(xml_text, xml_parser)
ref_xml_filepath = get_installed_resource_filepath(os.path.join('resources', 'uniprot-search-abl1.xml.gz'))
with gzip.open(ref_xml_filepath) as ref_xml_file:
ref_xml_root = etree.parse(ref_xml_file, xml_parser)
entry_name = xml_root.find('entry/name').text
ref_entry_name = ref_xml_root.find('entry/name').text
assert entry_name == ref_entry_name
def test_retrieve_uniprot_matches_reference():
xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN')
xml_root = etree.fromstring(xml_text, xml_parser)
ref_xml_filepath = get_installed_resource_filepath(
os.path.join('resources', 'uniprot-search-abl1.xml.gz'))
with gzip.open(ref_xml_filepath) as ref_xml_file:
ref_xml_root = etree.parse(ref_xml_file, xml_parser)
entry_name = xml_root.find('entry/name').text
ref_entry_name = ref_xml_root.find('entry/name').text
assert entry_name == ref_entry_name
def test_retrieve_uniprot():
xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN')
xml_root = etree.fromstring(xml_text, xml_parser)
def test_retrieve_uniprot():
xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN')
xml_root = etree.fromstring(xml_text, xml_parser)
