def auto_regressive_model(input, target, weights, bias):
"""
Builds the auto regressive model. For details on the model, refer to the written report
"""
hidden01 = tf.matmul(normalize(input), weights['M1']) # V_d
hidden01 = tf.batch_matmul(tf.expand_dims(hidden01,2),tf.ones([batch_size,1,NUM_NOTES])) # V_d augmented to D across dimension 2
hidden02 = cumsum_weights(normalize(target), weights['M2'],D) # V_c
hidden = hidden01 + hidden02
y = tf.zeros([1], tf.float32)
split = tf.split(0, batch_size, hidden)
y = tf.batch_matmul(tf.expand_dims(tf.transpose(tf.squeeze(split[0])), 1), tf.expand_dims(tf.transpose(weights['W']), 2))
for i in range(1, len(split)):
y = tf.concat(0, [y, tf.batch_matmul(tf.expand_dims(tf.transpose(tf.squeeze(split[i])), 1),
tf.expand_dims(tf.transpose(weights['W']), 2))])
y = tf.squeeze(y)
output = tf.reshape(y,[batch_size,NUM_NOTES])
return output
def _define_distance_to_clusters(self, data):
"""Defines the Mahalanobis distance to the assigned Gaussian."""
# TODO(xavigonzalvo): reuse (input - mean) * cov^-1 * (input -
# mean) from log probability function.
self._all_scores = []
for shard in data:
all_scores = []
shard = tf.expand_dims(shard, 0)
for c in xrange(self._num_classes):
if self._covariance_type == FULL_COVARIANCE:
cov = self._covs[c, :, :]
elif self._covariance_type == DIAG_COVARIANCE:
cov = tf.diag(self._covs[c, :])
inverse = tf.matrix_inverse(cov + self._min_var)
inv_cov = tf.tile(
tf.expand_dims(inverse, 0),
tf.pack([self._num_examples, 1, 1]))
diff = tf.transpose(shard - self._means[c, :, :], perm=[1, 0, 2])
m_left = tf.batch_matmul(diff, inv_cov)
all_scores.append(tf.sqrt(tf.batch_matmul(
m_left, tf.transpose(diff, perm=[0, 2, 1])
)))
self._all_scores.append(tf.reshape(
tf.concat(1, all_scores),
tf.pack([self._num_examples, self._num_classes])))
# Distance to the associated class.
self._all_scores = tf.concat(0, self._all_scores)
assignments = tf.concat(0, self.assignments())
rows = tf.to_int64(tf.range(0, self._num_examples))
indices = tf.concat(1, [tf.expand_dims(rows, 1),
tf.expand_dims(assignments, 1)])
self._scores = tf.gather_nd(self._all_scores, indices)
def test_lanczos_bidiag(self):
np.random.seed(1)
a_np = np.random.uniform(
low=-1.0, high=1.0, size=np.prod(shape_)).reshape(shape_).astype(dtype_)
tol = 1e-12 if dtype_ == np.float64 else 1e-5
with self.test_session() as sess:
if use_static_shape_:
a = tf.constant(a_np)
else:
a = tf.placeholder(dtype_)
operator = util.create_operator(a)
lbd = lanczos.lanczos_bidiag(
operator, steps_, orthogonalize=orthogonalize_)
# The computed factorization should satisfy the equations
# A * V = U * B
# A' * U[:, :-1] = V * B[:-1, :]'
av = tf.batch_matmul(a, lbd.v)
ub = lanczos.bidiag_matmul(lbd.u, lbd.alpha, lbd.beta, adjoint_b=False)
atu = tf.batch_matmul(a, lbd.u[:, :-1], adj_x=True)
vbt = lanczos.bidiag_matmul(lbd.v, lbd.alpha, lbd.beta, adjoint_b=True)
if use_static_shape_:
av_val, ub_val, atu_val, vbt_val = sess.run([av, ub, atu, vbt])
else:
av_val, ub_val, atu_val, vbt_val = sess.run([av, ub, atu, vbt],
feed_dict={a: a_np})
self.assertAllClose(av_val, ub_val, atol=tol, rtol=tol)
self.assertAllClose(atu_val, vbt_val, atol=tol, rtol=tol)
def log_likelihood(batch): #batch is NxD matrix, where N is length of batch, D is dimension of samples #P(D|w) = prod( sum( pi*N(samp|k)) #exp(-square(mean-samp)) #multiplying by ones replicates the matrix, becomes (N,D,K) tmp1 = tf.batch_matmul(tf.reshape(batch, [N,D,1]), tf.ones([N,1,K])) #same but with the means matrix tmp2 = tf.batch_matmul(means, tf.ones([K,1,N])) tmp2 = tf.transpose(tmp2, [2,1,0]) # (x - mu) tmp3 = tmp1 - tmp2 tmp4 = tmp1 - tmp2 # (x - mu).T(x - mu) tmp3 = tf.batch_matmul(tf.transpose(tmp3, [0,2,1]), tmp3) tmp3 = tf.reduce_sum(tmp3,2) # -(x - mu).T(x - mu) tmp3 = -tmp3 # exp(-(x - mu).T(x - mu)) tmp3 = tf.exp(tmp3) #multiply by mixture weights tmp3 = tf.matmul(tmp3, mixture_weights) #log tmp3 = tf.log(tmp3) #sum over all samples of the batch tmp3 = tf.reduce_sum(tmp3,0) return tmp3
def build_node(self, x_in, c_in, h_in, scope="lstm_cell"):
#print (x_in, c_in, h_in, scope)
#print [type(thing) for thing in (x_in, c_in, h_in, scope)]
# print [(item.name, item.dtype) for thing in (h_in, c_in) for item in thing]
# print (x_in.name, x_in.dtype)
with tf.variable_scope(scope):
# print x.shape
# print h_in.get_shape()
x_with_h = tf.concat(2, [x_in, h_in])
ones_for_bias = tf.constant(np.ones([batch_size,1,1]), name="b", dtype=tf.float32)
x_h_concat = tf.concat(2, [ones_for_bias, x_with_h])
# forget gate layer
# print "w_f: ", self.w_f.get_shape()
# print "x_h_concat: ", x_h_concat.get_shape()
f = tf.sigmoid(tf.batch_matmul(x_h_concat, self.w_f))
# candidate values
i = tf.sigmoid(tf.batch_matmul(x_h_concat, self.w_i))
candidate_c = tf.tanh(tf.batch_matmul(x_h_concat, self.w_c))
# new cell state (hidden)
# forget old values of c
old_c_to_keep = tf.mul(f, c_in)
# scaled candidate values of c
new_c_to_keep = tf.mul(i, candidate_c)
c = tf.add(old_c_to_keep, new_c_to_keep)
# new scaled output
o = tf.sigmoid(tf.batch_matmul(x_h_concat, self.w_o))
h = tf.mul(o, tf.tanh(c))
return (c, h)
def __init__(self, memory_cells, query, project_query=False):
"""Define Attention.
Args:
memory_cells (SequenceBatch): a SequenceBatch containing a Tensor of shape (batch_size, num_cells, cell_dim)
query (Tensor): a tensor of shape (batch_size, query_dim).
project_query (bool): defaults to False. If True, the query goes through an extra projection layer to
coerce it to cell_dim.
"""
cell_dim = memory_cells.values.get_shape().as_list()[2]
if project_query:
# project the query up/down to cell_dim
self._projection_layer = Dense(cell_dim, activation='linear')
query = self._projection_layer(query) # (batch_size, cand_dim)
memory_values, memory_mask = memory_cells.values, memory_cells.mask
# batch matrix multiply to compute logit scores for all choices in all batches
query = tf.expand_dims(query, 2) # (batch_size, cell_dim, 1)
logit_values = tf.batch_matmul(memory_values, query) # (batch_size, num_cells, 1)
logit_values = tf.squeeze(logit_values, [2]) # (batch_size, num_cells)
# set all pad logits to negative infinity
logits = SequenceBatch(logit_values, memory_mask)
logits = logits.with_pad_value(-float('inf'))
# normalize to get probs
probs = tf.nn.softmax(logits.values) # (batch_size, num_cells)
retrieved = tf.batch_matmul(tf.expand_dims(probs, 1), memory_values) # (batch_size, 1, cell_dim)
retrieved = tf.squeeze(retrieved, [1]) # (batch_size, cell_dim)
self._logits = logits.values
self._probs = probs
self._retrieved = retrieved
def lstm_cell(i, o, state):
"""
Create a LSTM cell. See e.g.: http://arxiv.org/pdf/1402.1128v1.pdf
Note that in this formulation, we omit the various connections between the
previous state and the gates.
"""
i_list = tf.pack([i, i, i, i])
#print i_list.get_shape().as_list()
o_list = tf.pack([o, o, o, o])
ins = tf.batch_matmul(i_list, fico_x)
outs = tf.batch_matmul(o_list, fico_m)
h_x = ins + outs + fico_b
#print h_x.get_shape().as_list()
#forget_gate = tf.sigmoid(tf.matmul(i, fx) + tf.matmul(o, fm) + fb)
forget_gate = tf.sigmoid(h_x[0,:,:])
#input_gate = tf.sigmoid(tf.matmul(i, ix) + tf.matmul(o, im) + ib)
input_gate = tf.sigmoid(h_x[1,:,:])
#update = tf.tanh(tf.matmul(i, cx) + tf.matmul(o, cm) + cb)
update = tf.tanh(h_x[2,:,:])
state = forget_gate*state + input_gate*update
#output_gate = tf.sigmoid(tf.matmul(i, ox) + tf.matmul(o, om) + ob)
output_gate = tf.sigmoid(h_x[3,:,:])
h = output_gate * tf.tanh(state)
#print 'h', h.get_shape().as_list()
return h, state
def extract_patch(x, f_y, f_x, nchannels):
"""
Args:
x: [B, H, W, D]
f_y: [B, H, FH]
f_x: [B, W, FH]
nchannels: D
Returns:
patch: [B, FH, FW]
"""
patch = [None] * nchannels
fsize_h = tf.shape(f_y)[2]
fsize_w = tf.shape(f_x)[2]
hh = tf.shape(x)[1]
ww = tf.shape(x)[2]
for dd in xrange(nchannels):
# [B, H, W]
x_ch = tf.reshape(
tf.slice(x, [0, 0, 0, dd], [-1, -1, -1, 1]),
tf.pack([-1, hh, ww]))
patch[dd] = tf.reshape(tf.batch_matmul(
tf.batch_matmul(f_y, x_ch, adj_x=True),
f_x), tf.pack([-1, fsize_h, fsize_w, 1]))
return tf.concat(3, patch)
def Test(self):
np.random.seed(1)
n = shape_[-1]
batch_shape = shape_[:-2]
a = np.random.uniform(
low=-1.0, high=1.0, size=n * n).reshape([n, n]).astype(dtype_)
a += a.T
a = np.tile(a, batch_shape + (1, 1))
if dtype_ == np.float32:
atol = 1e-4
else:
atol = 1e-12
for compute_v in False, True:
np_e, np_v = np.linalg.eig(a)
with self.test_session():
if compute_v:
tf_e, tf_v = tf.self_adjoint_eig(tf.constant(a))
# Check that V*diag(E)*V^T is close to A.
a_ev = tf.batch_matmul(
tf.batch_matmul(tf_v, tf.batch_matrix_diag(tf_e)),
tf_v,
adj_y=True)
self.assertAllClose(a_ev.eval(), a, atol=atol)
# Compare to numpy.linalg.eig.
CompareEigenDecompositions(self, np_e, np_v, tf_e.eval(), tf_v.eval(),
atol)
else:
tf_e = tf.self_adjoint_eigvals(tf.constant(a))
self.assertAllClose(
np.sort(np_e, -1), np.sort(tf_e.eval(), -1), atol=atol)
def build_memory(self):
self.global_step = tf.Variable(0, name="global_step")
# Linear Projection Layer
self.T = tf.Variable(tf.random_normal([self.idim, self.edim],
stddev=self.init_std,
name="projection"))
reshape = tf.reshape(self.story, [-1, self.idim])
m = tf.matmul(reshape, self.T) # [batch_size * nstory, edim]
m = tf.reshape(m, [self.batch_size, self.nstory, -1])
reshape = tf.reshape(self.query, [-1, self.idim])
u = tf.matmul(reshape, self.T) # [batch_size * 1, edim]
u = tf.reshape(u, [self.batch_size, 1, -1])
reshape = tf.reshape(self.answer, [-1, self.idim])
g = tf.matmul(reshape, self.T) # [batch_size * nanswer, edim]
g = tf.reshape(g, [self.batch_size, self.nanswer, -1])
for h in xrange(self.nhop):
p = tf.batch_matmul(m, u, adj_y=True) # [batch_size, nstory. 1]
p = tf.reshape(p, [self.batch_size, -1])
p = tf.nn.softmax(p) # [batch_size, nstory]
reshape = tf.reshape(p, [self.batch_size, -1, 1])
o = tf.reduce_sum(tf.mul(m, reshape), 1)
u = tf.add(o, u)
logits = tf.batch_matmul(g, u, adj_y=True) # [batch_size, nanswer, 1]
logits = tf.reshape(logits, [self.batch_size, -1])
self.logits = logits
self.probs = tf.nn.softmax(logits)
def write(self, M0, write_w0s, write_heads):
write_w1s = []
for i in xrange(self.n_heads):
head = write_heads[i]
w0 = write_w0s[i]
w1 = NTMCell.address(M0, w0, head)
# For analysis
#w1 = tf.Print(w1, [w1], "write", summarize=1000)
write_w1s.append(w1)
M1 = M0
# Erases
for w1 in write_w1s:
we = 1 - tf.batch_matmul(
tf.expand_dims(w1, 2),
tf.expand_dims(head["erase"], 1)
)
M1 = M1 * we
# Writes
for w1 in write_w1s:
add = tf.batch_matmul(
tf.expand_dims(w1, 2),
tf.expand_dims(head["add"], 1),
)
M1 = M1 + add
return M1, write_w1s
def write(self, lstm_h, Fx, Fy, gamma):
with tf.variable_scope("writeW",reuse=self.share):
w = self.linear(lstm_h, self.N * self.N) # batch x (write_n*write_n)
w = tf.reshape(w, [-1, self.N, self.N])
Fyt = tf.transpose(Fy, perm=[0, 2, 1])
wr = tf.batch_matmul(Fyt, tf.batch_matmul(w, Fx))
return wr*tf.reshape(1.0/gamma, [-1,1,1])
def copy_net(decoder_out):
with tf.variable_scope('copy_net') as scope:
decoder_out = tf.reshape(decoder_out, [-1, decoder_hidden, 1])
source_prob = tf.batch_matmul(rnn_encoder_temp, decoder_out)
source_prob = tf.reshape(source_prob, [-1, 1, source_prob.get_shape().as_list()[1]])
voc_prob = tf.batch_matmul(source_prob, one_hot)
voc_prob = tf.reshape(voc_prob, [-1, voc_prob.get_shape().as_list()[-1]])
return voc_prob
def build_memory(self):
self.global_step = tf.Variable(0, name="global_step")
# embedding matrix A of dimension d*V,
# converting x_i into memory vectors v_i
self.A = tf.Variable(tf.random_normal([self.nwords, self.edim], stddev=self.init_std))
# embedding matrix B with the same dimension as A
# converting q to obtain an internal state u
self.B = tf.Variable(tf.random_normal([self.nwords, self.edim], stddev=self.init_std))
# C converts x into o
self.C = tf.Variable(tf.random_normal([self.edim, self.edim], stddev=self.init_std))
# Temporal Encoding
self.T_A = tf.Variable(tf.random_normal([self.mem_size, self.edim], stddev=self.init_std))
self.T_B = tf.Variable(tf.random_normal([self.mem_size, self.edim], stddev=self.init_std))
# m_i = sum A_ij * x_ij + T_A_i
# this embedding_lookup functions retrieves rows of self.A
Ain_c = tf.nn.embedding_lookup(self.A, self.context) # context is the previous words
Ain_t = tf.nn.embedding_lookup(self.T_A, self.time) # time is for temporal
Ain = tf.add(Ain_c, Ain_t)
# c_i = sum B_ij * u + T_B_i
# ???? is it B or C, looks like B is correct, but the notation is different from the paper
Bin_c = tf.nn.embedding_lookup(self.B, self.context)
Bin_t = tf.nn.embedding_lookup(self.T_B, self.time)
Bin = tf.add(Bin_c, Bin_t)
# 6 hops to go through
for h in range(self.nhop):
# reshape hid to be 3 dimensional
self.hid3dim = tf.reshape(self.hid[-1], [-1, 1, self.edim]) # -1 is used to infer the shape
# innerproduct of the memory units and the input vector
# A_in stores the memory units, i.e., the context and temporal
# hid represents the hidden state, and what is that?
Aout = tf.batch_matmul(self.hid3dim, Ain, adj_y=True)
Aout2dim = tf.reshape(Aout, [-1, self.mem_size])
P = tf.nn.softmax(Aout2dim)
probs3dim = tf.reshape(P, [-1, 1, self.mem_size])
Bout = tf.batch_matmul(probs3dim, Bin) # the output vector
Bout2dim = tf.reshape(Bout, [-1, self.edim])
Cout = tf.matmul(self.hid[-1], self.C)
Dout = tf.add(Cout, Bout2dim) # W(o + u)
self.share_list[0].append(Cout)
if self.lindim == self.edim:
self.hid.append(Dout)
elif self.lindim == 0:
self.hid.append(tf.nn.relu(Dout))
else:
F = tf.slice(Dout, [0, 0], [self.batch_size, self.lindim])
G = tf.slice(Dout, [0, self.lindim], [self.batch_size, self.edim-self.lindim])
K = tf.nn.relu(G)
self.hid.append(tf.concat(1, [F, K]))
def read(self, x, Fx, Fy, gamma):
Fxr = tf.reshape(Fx, [-1, 1, self.N, self.shape[1]])
Fyr = tf.reshape(Fy, [-1, 1, self.N, self.shape[2]])
Fxr3 = tf.concat(1, [Fxr, Fxr, Fxr]) # batch * 3 * N * A
Fyr3 = tf.concat(1, [Fyr, Fyr, Fyr])
Fxt3 = tf.transpose(Fxr3, perm=[0, 1, 3, 2])
glimpse = tf.batch_matmul(Fyr3, tf.batch_matmul(x, Fxt3))
glimpse = tf.reshape(glimpse, [-1, self.att_size])
return glimpse * tf.reshape(gamma, [-1,1])
def get_function(points, mu, sigma): # f_ik [n,k]
div = coef*tf.rsqrt(tf.batch_matrix_determinant(sigma)) # ((2pi)^p*|S_k|)^-1/2 [k]
div = tf.tile(tf.reshape(div, [1,k]), [n,1]) # [n,k]
diff = tf.sub(tf.tile(points, [k,1,1]), tf.tile(mu, [n,1,1])) # x_i-u_k [n*k, p, 1]
sigma = tf.tile(sigma, [n,1,1]) # [n*k,p,p]
exp = tf.exp(-0.5*tf.batch_matmul( tf.transpose(diff,perm=[0,2,1]), tf.batch_matmul(tf.batch_matrix_inverse(sigma), diff) )) # e^(d'*S^-1*d)_ik [n*k, 1, 1]
exp = tf.reshape(exp, [n,k])
return tf.mul(div, exp) # Multivariate normal distribution evaluated for each vector, for each cluster parameter. Hence the [n,k] shape.
def write(windows, N, center_x, center_y, delta, sigma, gamma):
tol = 1e-5
W = tf.reshape(windows, [-1, N, N])
FX, FY = banks(center_x, center_y, sigma, delta, N, (28,28))
I = tf.batch_matmul(W, FY);
I = tf.batch_matmul(tf.transpose(FX, [0,2,1]), I)
return tf.expand_dims(1/(gamma + tol),1)*tf.reshape(I, [-1, 28*28])
def model(input1, gating_network): # return tf.nn.softmax(tf.matmul(tf.transpose(gating_network), (tf.reshape(tf.batch_matmul(w, input_aa), [L-1, n_aa]) + b))) input_times_w = tf.reshape(tf.batch_matmul(w, input1), [L, L, n_aa]) input_times_w_plus_b = input_times_w + b activation_function = tf.nn.relu(input_times_w_plus_b) # activation_function = tf.sigmoid(input_times_w_plus_b) use_gate = tf.batch_matmul(tf.transpose(activation_function, perm=[0, 2, 1]), tf.transpose(gating_network, perm=[0,1,2])) #perm=[1,0,2] softmax_output = tf.nn.softmax(tf.reshape(use_gate, [L, n_aa])) return softmax_output
def buildSimilarity(self):
q_feature = self.tensors['q_feature']
a_feature = self.tensors['a_feature']
with tf.name_scope('similarity'):
q_norm = tf.sqrt(tf.reduce_sum(q_feature ** 2, reduction_indices=[1], keep_dims=True))
a_norm = tf.sqrt(tf.reduce_sum(a_feature ** 2, reduction_indices=[1], keep_dims=True))
product = tf.batch_matmul(q_feature, a_feature, adj_x=True, adj_y=False, name="product")
denominator = tf.batch_matmul(q_norm, a_norm, adj_x=False, adj_y=True, name="denominator")
similarity = tf.squeeze(product / (denominator + EPSILON), [-1,-2], name='similarity')
self.tensors['similarity'] = similarity
def read(images, N, delta, gamma, sigma, center_x, center_y):
#TODO: Make configurable shape
FX, FY = banks(center_x, center_y, sigma, delta, N, (28,28))
I = tf.reshape(images, [-1, 28, 28])
I = tf.batch_matmul(FY, I);
I = tf.batch_matmul(I, tf.transpose(FX, [0,2,1]))
return tf.expand_dims(gamma,1)*tf.reshape(I, [-1, N*N])
def threee_tensor_mul(A, B, C, res): # for example # A = tf.ones([4, 3, 2], tf.int32) # B = tf.ones([4, 2, 5, 3], tf.int32) # C = tf.ones([4, 5, 6], tf.int32) # return: (4, 3, 6) which combine 3 channel of matrix multiplication c = B.get_shape().as_list()[-1] res += tf.batch_matmul(tf.batch_matmul(A, B), C) return res
def build_generator(self):
video = tf.placeholder(tf.float32, [self.batch_size, self.n_lstm_steps, self.dim_image])
video_mask = tf.placeholder(tf.float32, [self.batch_size, self.n_lstm_steps])
pos_mask = tf.placeholder(tf.float32,[self.batch_size])
video_flat = tf.reshape(video, [-1, self.dim_image])
image_emb = tf.nn.xw_plus_b( video_flat, self.encode_image_W, self.encode_image_b)
image_emb = tf.reshape(image_emb, [self.batch_size, self.n_lstm_steps, self.dim_hidden])
image_emb = tf.mul(image_emb, tf.tile(tf.expand_dims(tf.expand_dims(pos_mask, 1), 1),[1, self.n_lstm_steps, self.dim_hidden]))
image_emb = tf.concat(2,[image_emb, tf.tile(tf.expand_dims(1-tf.expand_dims(pos_mask,1), 1),[1, self.n_lstm_steps, 1])])
image_emb = tf.transpose(image_emb, [1,0,2])
state1 = tf.zeros([self.batch_size, self.lstm3.state_size])
h_prev = tf.zeros([self.batch_size, self.dim_hidden])
generated_words = []
current_embed = tf.zeros([self.batch_size, self.dim_hidden])
brcst_w = tf.tile(tf.expand_dims(self.embed_att_w, 0), [self.n_lstm_steps,1,1]) # n x h x 1
image_part = tf.batch_matmul(image_emb, tf.tile(tf.expand_dims(self.embed_att_Ua, 0), [self.n_lstm_steps,1,1])) + self.embed_att_ba # n x b x h
for i in range(16):
e = tf.tanh(tf.matmul(h_prev, self.embed_att_Wa) + image_part) # n x b x h
e = tf.batch_matmul(e, brcst_w)
e = tf.reduce_sum(e,2) # n x b
e_hat_exp = tf.mul(tf.transpose(video_mask), tf.exp(e)) # n x b
denomin = tf.reduce_sum(e_hat_exp,0) # b
denomin = denomin + tf.to_float(tf.equal(denomin, 0))
alphas = tf.tile(tf.expand_dims(tf.div(e_hat_exp,denomin),2),[1,1,self.dim_hidden+1]) # n x b x h
attention_list = tf.mul(alphas, image_emb) # n x b x h
atten = tf.reduce_sum(attention_list,0) # b x h
if i > 0: tf.get_variable_scope().reuse_variables()
with tf.variable_scope("LSTM3") as vs:
output1, state1 = self.lstm3( tf.concat(1,[atten, current_embed]), state1 ) # b x h
lstm3_variables = [v for v in tf.all_variables() if v.name.startswith(vs.name)]
output2 = tf.tanh(tf.nn.xw_plus_b(tf.concat(1,[output1,atten,current_embed]), self.embed_nn_Wp, self.embed_nn_bp)) # b x h
#with tf.variable_scope("LSTM2"):
# output2, state2 = self.lstm2( tf.concat(1,[current_embed,output1]), state2 )
h_prev = output1
logit_words = tf.nn.xw_plus_b( output2, self.embed_word_W, self.embed_word_b) # b x w
max_prob_index = tf.argmax(logit_words, 1) # b
generated_words.append(max_prob_index) # b
#current_embed = tf.matmul(logit_words,self.Wemb_W) + self.Wemb_b # b x h
#current_embed = tf.nn.xw_plus_b( logit_words, self.Wemb_W, self.Wemb_b) # b x h
with tf.device("/cpu:0"):
current_embed = tf.nn.embedding_lookup(self.Wemb, max_prob_index)
# current_embed = tf.expand_dims(current_embed, 0)
generated_words = tf.transpose(tf.pack(generated_words))
return video, video_mask, generated_words, pos_mask, lstm3_variables
def get_function(points, mu, sigma): # f_ik [n,k]
div = coef * tf.rsqrt(tf.batch_matrix_determinant(sigma)) # ((2pi)^p*|S_k|)^-1/2 [k]
div = tf.tile(tf.reshape(div, [1, k]), [n, 1]) # [n,k]
diff = tf.sub(tf.tile(points, [k, 1, 1]), tf.tile(mu, [n, 1, 1])) # x_i-u_k [n*k, p, 1]
sigma = tf.tile(sigma, [n, 1, 1]) # [n*k,p,p]
exp = tf.exp(
-0.5
* tf.batch_matmul(tf.transpose(diff, perm=[0, 2, 1]), tf.batch_matmul(tf.batch_matrix_inverse(sigma), diff))
) # e^(d'*S^-1*d)_ik [n*k, 1, 1]
exp = tf.reshape(exp, [n, k])
return tf.mul(div, exp)
def write_attn(h_dec):
with tf.variable_scope("writeW",reuse=DO_SHARE):
w=linear(h_dec,write_size) # batch x (write_n*write_n)
N=write_n
w=tf.reshape(w,[batch_size,N,N])
Fx,Fy,gamma=attn_window("write",h_dec,write_n)
Fyt=tf.transpose(Fy,perm=[0,2,1])
wr=tf.batch_matmul(Fyt,tf.batch_matmul(w,Fx))
wr=tf.reshape(wr,[batch_size,B*A])
#gamma=tf.tile(gamma,[1,B*A])
return wr*tf.reshape(1.0/gamma,[-1,1])
def write(h_dec):
"""Function to implement 29"""
with tf.variable_scope("writeW",reuse=REUSE_T):
w=linear(h_dec,write_size) # batch x (patch_write*patch_write)
N=patch_write
w=tf.reshape(w,[batch_size,N,N])
Fx,Fy,gamma=attn_window("write",h_dec,patch_write)
Fyt=tf.transpose(Fy,perm=[0,2,1])
wr=tf.batch_matmul(Fyt,tf.batch_matmul(w,Fx))
wr=tf.reshape(wr,[batch_size,B*A])
#gamma=tf.tile(gamma,[1,B*A])
return wr*tf.reshape(1.0/gamma,[-1,1])
def train_graph(self, video, video_mask, caption, caption_mask):
video_flat = tf.reshape(video, [-1, self.dim_image]) # (b x n) x d
image_emb = tf.nn.xw_plus_b( video_flat, self.encode_image_W, self.encode_image_b) # (b x n) x h
image_emb = tf.reshape(image_emb, [self.batch_size, self.n_lstm_steps, self.dim_hidden]) # b x n x h
image_emb = tf.transpose(image_emb, [1,0,2]) # n x b x h
state1 = tf.zeros([self.batch_size, self.lstm3.state_size]) # b x s
h_prev = tf.zeros([self.batch_size, self.dim_hidden]) # b x h
loss_caption =tf.zeros([self.batch_size])
current_embed = tf.zeros([self.batch_size, self.dim_hidden]) # b x h
brcst_w = tf.tile(tf.expand_dims(self.embed_att_w, 0), [self.n_lstm_steps,1,1]) # n x h x 1
image_part = tf.batch_matmul(image_emb, tf.tile(tf.expand_dims(self.embed_att_Ua, 0), [self.n_lstm_steps,1,1])) + self.embed_att_ba # n x b x h
for i in range(16):
e = tf.tanh(tf.matmul(h_prev, self.embed_att_Wa) + image_part) # n x b x h
e = tf.batch_matmul(e, brcst_w)
e = tf.reduce_sum(e,2) # n x b
e_hat_exp = tf.mul(tf.transpose(video_mask), tf.exp(e)) # n x b
denomin = tf.reduce_sum(e_hat_exp,0) # b
denomin = denomin + tf.to_float(tf.equal(denomin, 0))
alphas = tf.tile(tf.expand_dims(tf.div(e_hat_exp,denomin),2),[1,1,self.dim_hidden]) # n x b x h
attention_list = tf.mul(alphas, image_emb) # n x b x h
atten = tf.reduce_sum(attention_list,0) # b x h
#current_embed = tf.nn.xw_plus_b( onehot_labels, self.Wemb_W, self.Wemb_b) # b x h
#with tf.device("/cpu:0"):
# current_embed = tf.nn.embedding_lookup(self.Wemb, caption[:,i-1])
if i > 0: tf.get_variable_scope().reuse_variables()
with tf.variable_scope("LSTM3"):
output1, state1 = self.lstm3_dropout( tf.concat(1,[atten, current_embed]), state1 ) # b x h
output2 = tf.tanh(tf.nn.xw_plus_b(tf.concat(1,[output1,atten,current_embed]), self.embed_nn_Wp, self.embed_nn_bp)) # b x h
#with tf.variable_scope("LSTM2"):
# output2, state2 = self.lstm2_dropout( tf.concat(1,[current_embed, output1]), state2 )
h_prev = output1 # b x h
labels = tf.expand_dims(caption[:,i], 1) # b x 1
indices = tf.expand_dims(tf.range(0, self.batch_size, 1), 1) # b x 1
concated = tf.concat(1, [indices, labels]) # b x 2
onehot_labels = tf.sparse_to_dense(concated, tf.pack([self.batch_size, self.n_words]), 1.0, 0.0) # b x w
#current_embed = tf.matmul(onehot_labels,self.Wemb_W) + self.Wemb_b # b x h
with tf.device("/cpu:0"):
current_embed = tf.nn.embedding_lookup(self.Wemb, caption[:,i])
logit_words = tf.nn.xw_plus_b(output2, self.embed_word_W, self.embed_word_b) # b x w
cross_entropy = tf.nn.softmax_cross_entropy_with_logits(logit_words, onehot_labels) # b x 1
cross_entropy = cross_entropy * caption_mask[:,i] # b x 1
loss_caption += cross_entropy # 1
loss_caption = loss_caption / tf.reduce_sum(caption_mask, 1)
return loss_caption
def build_model(self):
video = tf.placeholder(tf.float32, [self.batch_size, self.n_lstm_steps, self.dim_image]) # b x n x d
video_mask = tf.placeholder(tf.float32, [self.batch_size, self.n_lstm_steps]) # b x n
caption = tf.placeholder(tf.int32, [self.batch_size, n_caption_step]) # b x 16
caption_mask = tf.placeholder(tf.float32, [self.batch_size, n_caption_step]) # b x 16
video_flat = tf.reshape(video, [-1, self.dim_image]) # (b x n) x d
image_emb = tf.nn.xw_plus_b( video_flat, self.encode_image_W, self.encode_image_b) # (b x n) x h
image_emb = tf.reshape(image_emb, [self.batch_size, self.n_lstm_steps, self.dim_hidden]) # b x n x h
image_emb = tf.transpose(image_emb, [1,0,2]) # n x b x h
state1 = tf.zeros([self.batch_size, self.lstm3.state_size]) # b x s
h_prev = tf.zeros([self.batch_size, self.dim_hidden]) # b x h
loss_caption = 0.0
current_embed = tf.zeros([self.batch_size, self.dim_hidden]) # b x h
brcst_w = tf.tile(tf.expand_dims(self.embed_att_w, 0), [self.n_lstm_steps,1,1]) # n x h x 1
image_part = tf.batch_matmul(image_emb, tf.tile(tf.expand_dims(self.embed_att_Ua, 0), [self.n_lstm_steps,1,1])) + self.embed_att_ba # n x b x h
for i in range(n_caption_step):
e = tf.tanh(tf.matmul(h_prev, self.embed_att_Wa) + image_part) # n x b x h
e = tf.batch_matmul(e, brcst_w) # unnormalized relevance score
e = tf.reduce_sum(e,2) # n x b
e_hat_exp = tf.mul(tf.transpose(video_mask), tf.exp(e)) # n x b
denomin = tf.reduce_sum(e_hat_exp,0) # b
denomin = denomin + tf.to_float(tf.equal(denomin, 0)) # regularize denominator
alphas = tf.tile(tf.expand_dims(tf.div(e_hat_exp,denomin),2),[1,1,self.dim_hidden]) # n x b x h # normalize to obtain alpha
attention_list = tf.mul(alphas, image_emb) # n x b x h
atten = tf.reduce_sum(attention_list,0) # b x h # soft-attention weighted sum
if i > 0: tf.get_variable_scope().reuse_variables()
with tf.variable_scope("LSTM3"):
output1, state1 = self.lstm3_dropout( tf.concat(1,[atten, current_embed]), state1 ) # b x h
output2 = tf.tanh(tf.nn.xw_plus_b(tf.concat(1,[output1,atten,current_embed]), self.embed_nn_Wp, self.embed_nn_bp)) # b x h
h_prev = output1 # b x h
labels = tf.expand_dims(caption[:,i], 1) # b x 1
indices = tf.expand_dims(tf.range(0, self.batch_size, 1), 1) # b x 1
concated = tf.concat(1, [indices, labels]) # b x 2
onehot_labels = tf.sparse_to_dense(concated, tf.pack([self.batch_size, self.n_words]), 1.0, 0.0) # b x w
with tf.device("/cpu:0"):
current_embed = tf.nn.embedding_lookup(self.Wemb, caption[:,i])
logit_words = tf.nn.xw_plus_b(output2, self.embed_word_W, self.embed_word_b) # b x w
cross_entropy = tf.nn.softmax_cross_entropy_with_logits(logit_words, onehot_labels) # b x 1
cross_entropy = cross_entropy * caption_mask[:,i] # b x 1
loss_caption += tf.reduce_sum(cross_entropy) # 1
loss_caption = loss_caption / tf.reduce_sum(caption_mask)
loss = loss_caption
return loss, video, video_mask, caption, caption_mask
def sampleQ_psi(z,u,Q_phi):
A,B,o,v,r=transition(z)
with tf.variable_scope("sampleQ_psi"):
mu_t=tf.expand_dims(Q_phi.mu,-1) # batch,z_dim,1
Amu=tf.squeeze(tf.batch_matmul(A,mu_t), [-1])
u=tf.expand_dims(u,-1) # batch,u_dim,1
Bu=tf.squeeze(tf.batch_matmul(B,u),[-1])
Q_psi=NormalDistribution(Amu+Bu+o,Q_phi.sigma,Q_phi.logsigma, v, r)
# the actual z_next sample is generated by deterministically transforming z_t
z=tf.expand_dims(z,-1)
Az=tf.squeeze(tf.batch_matmul(A,z),[-1])
z_next=Az+Bu+o
return z_next,Q_psi#,(A,B,o,v,r) # debugging
def tensor(self, domain=None):
if self.defined is not None:
if domain is None:
return self.defined(self.type_idx, self.domain.tensor)
else:
return self.defined(self.type_idx, domain.tensor)
if domain is None:
domain = self.domain
X = domain.tensor
XW = tf.batch_matmul(tf.tile(tf.expand_dims(X, 0), [self.number_of_layers, 1, 1]), self.W)
XWX = tf.squeeze(tf.batch_matmul(tf.expand_dims(X, 1), tf.transpose(XW, [1, 2, 0])))
XV = tf.matmul(X, tf.transpose(self.V))
gX = tf.matmul(tf.tanh(XWX + XV + self.b), self.u)
return tf.sigmoid(gX)
def model(input1, gating_network): input_times_w_plus_b = tf.reshape(tf.batch_matmul(w, input1), [L, L, n_aa]) + b #the softmax takes in a matrix have to do it myself exp_ = tf.exp(input_times_w_plus_b) sums = tf.reshape(tf.reduce_sum(exp_, 2), [L,L,1]) try1 = tf.tile(sums, [1,1,n_aa]) activation_function = exp_ / try1 # activation_function = tf.sigmoid(input_times_w_plus_b) # activation_function = tf.nn.relu(softmaxed) use_gate = tf.batch_matmul(tf.transpose(activation_function, perm=[0, 2, 1]), tf.transpose(gating_network, perm=[0,1,2])) #perm=[1,0,2] # output = tf.nn.softmax(tf.reshape(use_gate, [L, n_aa])) output = tf.reshape(use_gate, [L, n_aa]) return output
def build_model(self):
video = tf.placeholder(
tf.float32,
[self.batch_size, self.n_lstm_steps, self.dim_image]) # b x n x d
video_mask = tf.placeholder(
tf.float32, [self.batch_size, self.n_lstm_steps]) # b x n
caption = tf.placeholder(tf.int32,
[self.batch_size, n_caption_step]) # b x 16
caption_mask = tf.placeholder(
tf.float32, [self.batch_size, n_caption_step]) # b x 16
video_flat = tf.reshape(video, [-1, self.dim_image]) # (b x n) x d
image_emb = tf.nn.xw_plus_b(video_flat, self.encode_image_W,
self.encode_image_b) # (b x n) x h
image_emb = tf.reshape(
image_emb,
[self.batch_size, self.n_lstm_steps, self.dim_hidden]) # b x n x h
image_emb = tf.transpose(image_emb, [1, 0, 2]) # n x b x h
state1 = tf.zeros([self.batch_size, self.lstm3.state_size]) # b x s
h_prev = tf.zeros([self.batch_size, self.dim_hidden]) # b x h
loss_caption = 0.0
current_embed = tf.zeros([self.batch_size, self.dim_hidden]) # b x h
brcst_w = tf.tile(tf.expand_dims(self.embed_att_w, 0),
[self.n_lstm_steps, 1, 1]) # n x h x 1
image_part = tf.batch_matmul(
image_emb,
tf.tile(
tf.expand_dims(self.embed_att_Ua, 0),
[self.n_lstm_steps, 1, 1])) + self.embed_att_ba # n x b x h
for i in range(n_caption_step):
e = tf.tanh(tf.matmul(h_prev, self.embed_att_Wa) +
image_part) # n x b x h
e = tf.batch_matmul(e, brcst_w) # unnormalized relevance score
e = tf.reduce_sum(e, 2) # n x b
e_hat_exp = tf.mul(tf.transpose(video_mask), tf.exp(e)) # n x b
denomin = tf.reduce_sum(e_hat_exp, 0) # b
denomin = denomin + tf.to_float(tf.equal(
denomin, 0)) # regularize denominator
alphas = tf.tile(tf.expand_dims(tf.div(e_hat_exp, denomin), 2),
[1, 1, self.dim_hidden
]) # n x b x h # normalize to obtain alpha
attention_list = tf.mul(alphas, image_emb) # n x b x h
atten = tf.reduce_sum(
attention_list,
0) # b x h # soft-attention weighted sum
if i > 0: tf.get_variable_scope().reuse_variables()
with tf.variable_scope("LSTM3"):
output1, state1 = self.lstm3_dropout(
tf.concat(1, [atten, current_embed]), state1) # b x h
output2 = tf.tanh(
tf.nn.xw_plus_b(tf.concat(1, [output1, atten, current_embed]),
self.embed_nn_Wp, self.embed_nn_bp)) # b x h
h_prev = output1 # b x h
labels = tf.expand_dims(caption[:, i], 1) # b x 1
indices = tf.expand_dims(tf.range(0, self.batch_size, 1),
1) # b x 1
concated = tf.concat(1, [indices, labels]) # b x 2
onehot_labels = tf.sparse_to_dense(
concated, tf.pack([self.batch_size,
self.n_words]), 1.0, 0.0) # b x w
with tf.device("/cpu:0"):
current_embed = tf.nn.embedding_lookup(self.Wemb, caption[:,
i])
logit_words = tf.nn.xw_plus_b(output2, self.embed_word_W,
self.embed_word_b) # b x w
cross_entropy = tf.nn.softmax_cross_entropy_with_logits(
logit_words, onehot_labels) # b x 1
cross_entropy = cross_entropy * caption_mask[:, i] # b x 1
loss_caption += tf.reduce_sum(cross_entropy) # 1
loss_caption = loss_caption / tf.reduce_sum(caption_mask)
loss = loss_caption
return loss, video, video_mask, caption, caption_mask
def build_graph(self):
with self.graph.as_default():
# placeholders
self.X = tf.placeholder(tf.int64, [None, self.n_features], name='X')
self.Y = tf.placeholder(tf.float32, (None), name='Y')
# list of TT-cores
self.G = [None]*self.n_features
# list of TT-cores used for penalty
self.G_exp = [None]*self.n_features
for i in range(self.n_features):
shape = [self.s_features[i] + 1, self.rank, self.rank]
if i==0:
shape = [self.s_features[i] + 1, 1, self.rank]
if i==(self.n_features - 1):
shape = [self.s_features[i] + 1, self.rank, 1]
content = None
if self.init_vals is None:
content = tf.random_normal(shape, stddev=self.init_std)
else:
assert(self.init_vals[i].shape==tuple(shape))
content = self.init_vals[i] + tf.random_normal(shape, stddev=self.init_std)
self.G[i] = tf.Variable(content, trainable=True, name='G_{}'.format(i))
exp_weights = tf.constant([1] + [self.exp_reg] * self.s_features[i], shape=(self.s_features[i] + 1, 1, 1))
self.G_exp[i] = self.G[i] * exp_weights
# main computation part
cur_col = self.X[:, 0]
tower = tf.gather(self.G[0], cur_col)
self.outputs = tf.add(self.G[0][0], tower)
for i in range(1, self.n_features):
cur_col = self.X[:, i]
cur_tower = tf.gather(self.G[i], cur_col)
cur_A = tf.add(self.G[i][0], cur_tower)
self.outputs = tf.batch_matmul(self.outputs, cur_A)
self.outputs = tf.squeeze(self.outputs, [1, 2])
# regularization penalty
self.penalty = tf.reshape(
tensor=tf.einsum('nip,njq->ijpq', self.G_exp[0], self.G_exp[0]),
shape=(1, self.rank**2)
)
for i in range(1, self.n_features):
last_dim = 1 if i==self.n_features-1 else self.rank**2
summed_kron_prod = tf.reshape(
tensor=tf.einsum('nip,njq->ijpq', self.G_exp[i], self.G_exp[i]),
shape=(self.rank**2, last_dim)
)
self.penalty = tf.matmul(self.penalty, summed_kron_prod)
# MSE loss
self.loss = tf.reduce_mean((self.outputs - self.Y)**2)
# # LogLoss
# self.margins = -self.Y * self.outputs
# sself.raw_loss = tf.log(tf.add(1.0, tf.exp(self.margins)))
# self.loss = tf.reduce_mean(tf.minimum(self.raw_loss, 100, name='truncated_log_loss'))
self.penalized_loss = self.loss + self.reg * tf.squeeze(self.penalty)
# others
self.trainer = tf.train.AdamOptimizer(0.001).minimize(self.penalized_loss)
self.init_all_vars = tf.initialize_all_variables()
self.saver = tf.train.Saver()
def build(self):
tf.reset_default_graph()
with tf.variable_scope("graph", initializer=orthogonal_initializer()):
# Variables (matrix of embeddings/transformations)
self._ht = ht = tf.get_variable(
name='ht', # for t AND h
shape=[self.num_cons, self.dim],
dtype=tf.float32)
self._r = r = tf.get_variable(name='r',
shape=[self.num_rels, self.dim],
dtype=tf.float32)
# Mh has |r| number of matrices, each dedicated to a relation
self._Mh = Mh = tf.get_variable(
name='Mh',
shape=[self.num_rels, self.dim * self.dim],
dtype=tf.float32,
)
self._ht_assign = ht_assign = tf.placeholder(
name='ht_assign',
shape=[self.num_cons, self.dim],
dtype=tf.float32)
self._r_assign = r_assign = tf.placeholder(
name='r_assign',
shape=[self.num_rels, self.dim],
dtype=tf.float32)
self._m_assign = m_assign = tf.placeholder(
name='r_assign',
shape=[self.num_rels, self.dim * self.dim],
dtype=tf.float32)
# Type A loss : [|| M_hr h + r - M_tr t ||_2 + m1 - || M_hr h' + r - M_tr t' ||_2]+ here [.]+ means max (. , 0)
self._A_h_index = A_h_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='A_h_index')
self._A_r_index = A_r_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='A_r_index')
self._A_t_index = A_t_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='A_t_index')
self._A_hn_index = A_hn_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='A_hn_index')
self._A_tn_index = A_tn_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='A_tn_index')
'''
A_loss_matrix = tf.subtract(
tf.add(
tf.batch_matmul(A_h_con_batch, tf.reshape(A_mat_h_batch, [-1, self.dim, self.dim])),
A_rel_batch),
tf.batch_matmul(A_t_con_batch, tf.reshape(A_mat_h_batch, [-1, self.dim, self.dim]))
)'''
# a batch of vectors multiply a batch of matrices.
A_h_con_batch = tf.nn.embedding_lookup(ht, A_h_index)
A_t_con_batch = tf.nn.embedding_lookup(ht, A_t_index)
A_rel_batch = tf.nn.embedding_lookup(r, A_r_index)
A_mat_h_batch = tf.nn.embedding_lookup(Mh, A_r_index)
#A_mat_t_batch = tf.nn.embedding_lookup(Mt, A_r_index)
A_hn_con_batch = tf.nn.embedding_lookup(ht, A_hn_index)
A_tn_con_batch = tf.nn.embedding_lookup(ht, A_tn_index)
# This is a batch of h * M_hr given a batch of (h, r, t)
A_h_batch_mul = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(A_h_con_batch, 1),
tf.reshape(A_mat_h_batch, [-1, self.dim, self.dim])), [1])
# This is a batch of t * M_hr given a batch of (h, r, t)
A_t_batch_mul = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(A_t_con_batch, 1),
tf.reshape(A_mat_h_batch, [-1, self.dim, self.dim])), [1])
# negative sampled h and t
A_hn_batch_mul = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(A_hn_con_batch, 1),
tf.reshape(A_mat_h_batch, [-1, self.dim, self.dim])), [1])
A_tn_batch_mul = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(A_tn_con_batch, 1),
tf.reshape(A_mat_h_batch, [-1, self.dim, self.dim])), [1])
# This stores h M_hr + r - t M_tr
A_loss_matrix = tf.subtract(tf.add(A_h_batch_mul, A_rel_batch),
A_t_batch_mul)
# This stores h' M_hr + r - t' M_tr for negative samples
A_neg_matrix = tf.subtract(tf.add(A_hn_batch_mul, A_rel_batch),
A_tn_batch_mul)
# L-2 norm
# [||h M_hr + r - t M_tr|| + m1 - ||h' M_hr + r - t' M_tr||)]+ here [.]+ means max (. , 0)
if self.L1:
self._A_loss = A_loss = tf.reduce_sum(
tf.maximum(
tf.subtract(
tf.add(tf.reduce_sum(tf.abs(A_loss_matrix), 1),
self._m1),
tf.reduce_sum(tf.abs(A_neg_matrix), 1)), 0.))
else:
self._A_loss = A_loss = tf.reduce_sum(
tf.maximum(
tf.subtract(
tf.add(
tf.sqrt(
tf.reduce_sum(tf.square(A_loss_matrix),
1)), self._m1),
tf.sqrt(tf.reduce_sum(tf.square(A_neg_matrix),
1))), 0.))
# soft-constraint on vector norms for both positive and negative sampled h and t
# [||h|| - 1]+ + [||t|| - 1]+ + [||h'|| - 1]+ + [||t'|| - 1]+
#A_vec_restraint = tf.concat(0, [tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_h_con_batch), 1)), 1.), 0.), tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_t_con_batch), 1)), 1.), 0.), tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_hn_con_batch), 1)), 1.), 0.), tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_tn_con_batch), 1)), 1.), 0.)])
A_vec_restraint = tf.concat([
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(A_h_con_batch), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(A_t_con_batch), 1)),
1.), 0.)
], 0)
# soft-constraint on projected vectors for both positive and negative sampled h and t
#A_proj_restraint = tf.concat(0, [tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_h_batch_mul), 1)), 1.), 0.), tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_t_batch_mul), 1)), 1.), 0.), tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_hn_batch_mul), 1)), 1.), 0.), tf.maximum(tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_tn_batch_mul), 1)), 1.), 0.)])
A_proj_restraint = tf.concat([
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(A_h_batch_mul), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(A_t_batch_mul), 1)),
1.), 0.)
], 0)
A_rel_restraint = tf.maximum(
tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(A_rel_batch), 1)),
2.), 0.)
# Type B loss :
# 2 losses: t-related <- omega(M_t o1, M_t o2) and h-related <- omega(M_h o1, M_h o2)
# Let's use || a M_hr + r - b M_tr ||_2 as omega(a,b)
# They share the same input place holders
# Negative sampling samples only the "many" end
self._B_h_index = B_h_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='B_h_index')
self._B_r_index = B_r_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='B_r_index')
self._B_t_index = B_t_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='B_t_index')
# negative sampled h and t
self._B_hn_index = B_hn_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='B_hn_index')
self._B_tn_index = B_tn_index = tf.placeholder(
dtype=tf.int64, shape=[self.batch_size], name='B_tn_index')
B_con_h_batch = tf.nn.embedding_lookup(ht, B_h_index)
B_con_t_batch = tf.nn.embedding_lookup(ht, B_t_index)
B_mat_h_batch = tf.nn.embedding_lookup(Mh, B_r_index)
#B_mat_t_batch = tf.nn.embedding_lookup(Mt, B_r_index)
B_rel_batch = tf.nn.embedding_lookup(r, B_r_index)
B_con_hn_batch = tf.nn.embedding_lookup(ht, B_hn_index)
B_con_tn_batch = tf.nn.embedding_lookup(ht, B_tn_index)
# multiplication of a batch of vectors and a batch of matrices
B_t_batch_mul_head = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_h_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
B_t_batch_mul_tail = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_t_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
# multiplication of a batch of vectors and a batch of matrices for negative samples
B_tn_batch_mul_head = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_hn_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
B_tn_batch_mul_tail = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_tn_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
# t*M_hr + r ~ t*M_tr
# This stores h M_hr + r - t M_tr for more t's of the singular h's. Below it is the one for negative samples
B_t_loss_matrix = tf.subtract(
tf.add(B_t_batch_mul_head, B_rel_batch), B_t_batch_mul_tail)
B_tn_loss_matrix = tf.subtract(
tf.add(B_tn_batch_mul_head, B_rel_batch), B_tn_batch_mul_tail)
# [||h M_hr + r - t M_tr|| + m1 - ||h M_hr + r - t' M_tr||]+ Actually only t is corrupted for B_t related batches
if self.L1:
self._B_t_loss = B_t_loss = tf.reduce_sum(
tf.maximum(
tf.subtract(
tf.add(tf.reduce_sum(tf.abs(B_t_loss_matrix), 1),
self._m2),
tf.reduce_sum(tf.abs(B_tn_loss_matrix), 1)), 0.))
else:
self._B_t_loss = B_t_loss = tf.reduce_sum(
tf.maximum(
tf.subtract(
tf.add(
tf.sqrt(
tf.reduce_sum(tf.square(B_t_loss_matrix),
1)), self._m2),
tf.sqrt(
tf.reduce_sum(tf.square(B_tn_loss_matrix),
1))), 0.))
# multiplication of a batch of vectors and a batch of matrices
B_h_batch_mul_head = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_h_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
B_h_batch_mul_tail = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_t_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
# multiplication of a batch of vectors and a batch of matrices for negative samples
B_hn_batch_mul_head = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_hn_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
B_hn_batch_mul_tail = tf.squeeze(
tf.batch_matmul(
tf.expand_dims(B_con_tn_batch, 1),
tf.reshape(B_mat_h_batch, [-1, self.dim, self.dim])), [1])
# t*M_tr - r ~ h*M_hr
# This stores h M_hr + r - t M_tr for more h's of the singular t's. Below it is the one for negative samples
B_h_loss_matrix = tf.subtract(
tf.subtract(B_h_batch_mul_tail, B_rel_batch),
B_h_batch_mul_head)
B_hn_loss_matrix = tf.subtract(
tf.subtract(B_hn_batch_mul_tail, B_rel_batch),
B_hn_batch_mul_head)
# [||t M_tr - r - h M_hr|| + m2 - ||t M_tr - r - h M_hr|| ]+ Actually only h is corrupted for B_h related batches
if self.L1:
self._B_h_loss = B_h_loss = tf.reduce_sum(
tf.maximum(
tf.subtract(
tf.add(tf.reduce_sum(tf.abs(B_h_loss_matrix), 1),
self._m2),
tf.reduce_sum(tf.abs(B_hn_loss_matrix), 1)), 0.))
else:
self._B_h_loss = B_h_loss = tf.reduce_sum(
tf.maximum(
tf.subtract(
tf.add(
tf.sqrt(
tf.reduce_sum(tf.square(B_h_loss_matrix),
1)), self._m2),
tf.sqrt(
tf.reduce_sum(tf.square(B_hn_loss_matrix),
1))), 0.))
# penalize on pre- and post-projected vectors whose norm exceeds 1
B_vec_restraint = tf.concat([
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_con_h_batch), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_con_t_batch), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_con_hn_batch), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_con_tn_batch), 1)),
1.), 0.)
], 0)
B_t_proj_restraint = tf.concat([
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_t_batch_mul_head),
1)), 1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_t_batch_mul_tail),
1)), 1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(
tf.reduce_sum(tf.square(B_tn_batch_mul_head), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(
tf.reduce_sum(tf.square(B_tn_batch_mul_tail), 1)),
1.), 0.)
], 0)
B_h_proj_restraint = tf.concat([
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_h_batch_mul_head),
1)), 1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(tf.reduce_sum(tf.square(B_h_batch_mul_tail),
1)), 1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(
tf.reduce_sum(tf.square(B_hn_batch_mul_head), 1)),
1.), 0.),
tf.maximum(
tf.subtract(
tf.sqrt(
tf.reduce_sum(tf.square(B_hn_batch_mul_tail), 1)),
1.), 0.)
], 0)
B_rel_restraint = tf.maximum(
tf.subtract(tf.sqrt(tf.reduce_sum(tf.square(B_rel_batch), 1)),
2.), 0.)
# Type C loss : Soft-constraint on vector norms
#self._C_loss = C_loss = tf.reduce_sum(tf.concat(0, [A_vec_restraint, B_vec_restraint, A_proj_restraint, B_t_proj_restraint, B_h_proj_restraint, A_rel_restraint, B_rel_restraint]))
#self._C_loss = C_loss = tf.reduce_sum(tf.concat(0, [A_vec_restraint, B_vec_restraint, A_proj_restraint, B_t_proj_restraint, B_h_proj_restraint]))
self._C_loss_A = C_loss_A = tf.reduce_sum(
tf.concat([A_vec_restraint, A_proj_restraint, A_rel_restraint],
0))
self._C_loss_B1 = C_loss_B1 = tf.reduce_sum(
tf.concat(
[B_vec_restraint, B_t_proj_restraint, B_rel_restraint], 0))
self._C_loss_B2 = C_loss_B2 = tf.reduce_sum(
tf.concat(
[B_vec_restraint, B_h_proj_restraint, B_rel_restraint], 0))
# Force normalize pre-projected vecs
# Optimizer
self._lr = lr = tf.placeholder(tf.float32)
self._opt = opt = tf.train.GradientDescentOptimizer(lr)
self._train_op_A = train_op_A = opt.minimize(A_loss)
self._train_op_B_t = train_op_B_t = opt.minimize(B_t_loss)
self._train_op_B_h = train_op_B_h = opt.minimize(B_h_loss)
#self._train_op_C = train_op_C = opt.minimize(C_loss)
self._train_op_C_A = train_op_C_A = opt.minimize(C_loss_A)
self._train_op_C_B1 = train_op_C_B1 = opt.minimize(C_loss_B1)
self._train_op_C_B2 = train_op_C_B2 = opt.minimize(C_loss_B2)
self._assign_ht_op = assign_ht_op = ht.assign(ht_assign)
self._assign_r_op = assign_r_op = self._r.assign(r_assign)
self._assign_m_op = assign_m_op = self._Mh.assign(m_assign)
# Saver
self._saver = tf.train.Saver()
def _build_encoder(self):
"""Builds coattention encoder."""
# most used variables
params = self._params
batch_size = params.batch_size
hidden_size = params.hidden_size
min_timesteps = params.q_timesteps
max_timesteps = params.c_timesteps
with tf.variable_scope('embedding') as vs, tf.device(
self._next_device()):
# fixed embedding
embedding = tf.get_variable(
'embedding', [self._vsize, params.emb_size],
dtype=tf.float32,
initializer=tf.truncated_normal_initializer(stddev=1e-4),
trainable=False)
# embed c_inputs and q_inputs.
fn = lambda x: tf.nn.embedding_lookup(embedding, x)
c_vector = tf.map_fn(lambda x: fn(x),
self._contexts,
dtype=tf.float32)
c_embedding = tf.transpose(c_vector, perm=[1, 0, 2])
q_vector = tf.map_fn(lambda x: fn(x),
self._questions,
dtype=tf.float32)
q_embedding = tf.transpose(q_vector, perm=[1, 0, 2])
# shared lstm encoder
lstm_enc = tf.nn.rnn_cell.LSTMCell(hidden_size)
with tf.variable_scope('c_embedding'), tf.device(self._next_device()):
# compute context embedding
c, _ = tf.nn.dynamic_rnn(lstm_enc, c_embedding, dtype=tf.float32)
# append sentinel
fn = lambda x: tf.concat(
0, [x, tf.zeros([1, hidden_size], dtype=tf.float32)])
c_encoding = tf.map_fn(lambda x: fn(x), c, dtype=tf.float32)
with tf.variable_scope('q_embedding'), tf.device(self._next_device()):
# compute question embedding
q, _ = tf.nn.dynamic_rnn(lstm_enc, q_embedding, dtype=tf.float32)
# append sentinel
fn = lambda x: tf.concat(
0, [x, tf.zeros([1, hidden_size], dtype=tf.float32)])
q_encoding = tf.map_fn(lambda x: fn(x), q, dtype=tf.float32)
# allow variation between c_embedding and q_embedding
q_encoding = tf.tanh(
batch_linear(q_encoding, min_timesteps + 1, True))
q_variation = tf.transpose(q_encoding, perm=[0, 2, 1])
with tf.variable_scope('coattention'), tf.device(self._next_device()):
# compute affinity matrix, (batch_size, context+1, question+1)
L = tf.batch_matmul(c_encoding, q_variation)
# shape = (batch_size, question+1, context+1)
L_t = tf.transpose(L, perm=[0, 2, 1])
# normalize with respect to question
a_q = tf.map_fn(lambda x: tf.nn.softmax(x), L_t, dtype=tf.float32)
# normalize with respect to context
a_c = tf.map_fn(lambda x: tf.nn.softmax(x), L, dtype=tf.float32)
# summaries with respect to question, (batch_size, question+1, hidden_size)
c_q = tf.batch_matmul(a_q, c_encoding)
c_q_emb = tf.concat(
1,
[q_variation, tf.transpose(c_q, perm=[0, 2, 1])])
# summaries of previous attention with respect to context
c_d = tf.batch_matmul(c_q_emb, a_c, adj_y=True)
# final coattention context, (batch_size, context+1, 3*hidden_size)
co_att = tf.concat(
2, [c_encoding, tf.transpose(c_d, perm=[0, 2, 1])])
with tf.variable_scope('encoder'), tf.device(self._next_device()):
# LSTM for coattention encoding
cell_fw = tf.nn.rnn_cell.LSTMCell(hidden_size)
cell_bw = tf.nn.rnn_cell.LSTMCell(hidden_size)
# compute coattention encoding
u, _ = tf.nn.bidirectional_dynamic_rnn(
cell_fw,
cell_bw,
co_att,
sequence_length=tf.to_int64([max_timesteps] * batch_size),
dtype=tf.float32)
self._u = tf.concat(2, u)
def test_BatchMatMul(self):
t = tf.batch_matmul(*self.random((2, 4, 3, 4), (2, 4, 3, 5)),
adj_x=True)
self.check(t)
def create(model, config):
dim_v, dim_i, dim_d, dim_t, dim_m, dim_b, dim_n, dim_c = config.getint(
'vocabsize'), config.getint('wvecsize'), config.getint(
'depth'), config.getint('steps'), config.getint(
'memory'), config.getint('batch'), config.getint(
'deepness'), config.getint('classes')
lrate_ms, dstep_ms, drate_ms, optim_ms = config.getfloat(
'mslrate'), config.getint('msdstep'), config.getfloat(
'msdrate'), getattr(tf.train, config.get('msoptim'))
lrate_ce, dstep_ce, drate_ce, optim_ce = config.getfloat(
'celrate'), config.getint('cedstep'), config.getfloat(
'cedrate'), getattr(tf.train, config.get('ceoptim'))
with tf.name_scope('embedding'):
model['We'] = tf.Variable(tf.truncated_normal([dim_v, dim_i],
stddev=1.0 / dim_i),
name='We')
model['Be'] = tf.Variable(tf.truncated_normal([1, dim_i],
stddev=1.0 / dim_i),
name='Be')
with tf.name_scope('plstm'):
with tf.name_scope('input'):
for ii in xrange(dim_t):
model['pxi_%i' % ii] = tf.placeholder(tf.int32, [dim_b],
name='pxi_%i' % ii)
model['px_%i' % ii] = tf.add(tf.nn.embedding_lookup(
model['We'], model['pxi_%i' % ii]),
model['Be'],
name='px_%i' % ii)
with tf.name_scope('label'):
for ii in xrange(dim_t):
model['pyi_%i' % ii] = tf.placeholder(tf.int32, [dim_b],
name='pyi_%i' % ii)
model['py_%i' % ii] = tf.add(tf.nn.embedding_lookup(
model['We'], model['pyi_%i' % ii]),
model['Be'],
name='py_%i' % ii)
for i in xrange(dim_d):
with tf.name_scope('input_%i' % i):
for ii in xrange(dim_t):
model['px_%i_%i' %
(i,
ii)] = model['px_%i' %
ii] if i == 0 else model['ph_%i_%i' %
(i - 1, ii)]
with tf.name_scope('inputgate_%i' % i):
model['pWi_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='pWi_%i' % i)
model['pBi_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='pBi_%i' % i)
for ii in xrange(dim_t):
model['pi_%i_%i' % (i, ii)] = tf.nn.sigmoid(
tf.add(
tf.matmul(model['px_%i_%i' % (i, ii)],
model['pWi_%i' % i]),
model['pBi_%i' % i]),
name='pi_%i_%i' % (i, ii))
with tf.name_scope('forgetgate_%i' % i):
model['pWf_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='pWf_%i' % i)
model['pBf_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='pBf_%i' % i)
for ii in xrange(dim_t):
model['pf_%i_%i' % (i, ii)] = tf.nn.sigmoid(
tf.add(
tf.matmul(model['px_%i_%i' % (i, ii)],
model['pWf_%i' % i]),
model['pBf_%i' % i]),
name='pf_%i_%i' % (i, ii))
with tf.name_scope('outputgate_%i' % i):
model['pWo_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='pWo_%i' % i)
model['pBo_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='pBo_%i' % i)
for ii in xrange(dim_t):
model['po_%i_%i' % (i, ii)] = tf.nn.sigmoid(
tf.add(
tf.matmul(model['px_%i_%i' % (i, ii)],
model['pWo_%i' % i]),
model['pBo_%i' % i]),
name='po_%i_%i' % (i, ii))
with tf.name_scope('cellstate_%i' % i):
model['pWc_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='pWc_' + str(i))
model['pBc_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='pBc_' + str(i))
for ii in xrange(dim_t):
model['pcc_%i_%i' % (i, ii)] = tf.Variable(
tf.truncated_normal([dim_b, dim_i], stddev=1.0 /
dim_i),
name='pcc_%i_%i' % (i, ii)) if ii == 0 else model[
'pc_%i_%i' %
(i, ii - 1)] # consider starting with all zeros
model['pc_%i_%i' % (i, ii)] = tf.select(
tf.equal(model['pxi_%i' % ii],
tf.zeros([dim_b], tf.int32)),
model['pcc_%i_%i' % (i, ii)],
tf.add(
tf.mul(model['pf_%i_%i' % (i, ii)],
model['pcc_%i_%i' % (i, ii)]),
tf.mul(
model['pi_%i_%i' % (i, ii)],
tf.nn.tanh(
tf.add(
tf.matmul(model['px_%i_%i' % (i, ii)],
model['pWc_%i' % i]),
model['pBc_%i' % i])))),
name='pc_%i_%i' % (i, ii))
with tf.name_scope('hidden_%i' % i):
model['pWz_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='pWz_%i' % i)
model['pBz_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='pBz_%i' % i)
for ii in xrange(dim_t):
model['pz_%i_%i' % (i, ii)] = tf.add(
tf.matmul(model['pc_%i_%i' % (i, ii)],
model['pWz_%i' % i]),
model['pBz_%i' % i],
name='pz_%i_%i' % (i, ii))
with tf.name_scope('output_%i' % i):
for ii in xrange(dim_t):
model['ph_%i_%i' % (i, ii)] = tf.mul(
model['po_%i_%i' % (i, ii)],
tf.nn.tanh(model['pz_%i_%i' % (i, ii)]),
name='ph_%i_%i' % (i, ii))
with tf.name_scope('output'):
for ii in xrange(dim_t):
model['ph_%i' % ii] = model['ph_%i_%i' % (dim_d - 1, ii)]
with tf.name_scope('meansquared'):
for ii in xrange(dim_t):
model['pms_%i' %
ii] = tf.select(tf.equal(model['pxi_%i' % ii],
tf.zeros([dim_b], tf.int32)),
tf.zeros([dim_b], tf.float32),
tf.reduce_sum(
tf.square(
tf.sub(model['py_%i' % ii],
model['ph_%i' % ii])),
[1]),
name='pms_%i' % ii)
model['pms'] = tf.reduce_sum(tf.add_n(
[model['pms_%i' % ii] for ii in xrange(dim_t)]),
name='pms')
model['spms'] = tf.scalar_summary(model['pms'].name, model['pms'])
with tf.name_scope('memory'):
for i in xrange(dim_d):
model['hmi_%i' % i] = tf.reshape([
model['pc_%i_%i' % (i, ii)]
for ii in xrange(dim_t - dim_m, dim_t)
], [dim_t, dim_b, dim_i],
name='hmi_%i' % i)
model['hm_%i' % i] = tf.transpose(model['hmi_%i' % i], [1, 0, 2],
name='hm_%i' % i)
with tf.name_scope('hlstm'):
with tf.name_scope('input'):
for ii in xrange(dim_t):
model['hxi_%i' % ii] = tf.placeholder(tf.int32, [dim_b],
name='hxi_%i' % ii)
model['hx_%i' % ii] = tf.add(tf.nn.embedding_lookup(
model['We'], model['hxi_%i' % ii]),
model['Be'],
name='hx_%i' % ii)
with tf.name_scope('label'):
for ii in xrange(dim_t):
model['hyi_%i' % ii] = tf.placeholder(tf.int32, [dim_b],
name='hyi_%i' % ii)
model['hy_%i' % ii] = tf.add(tf.nn.embedding_lookup(
model['We'], model['hyi_%i' % ii]),
model['Be'],
name='hy_%i' % ii)
for i in xrange(dim_d):
with tf.name_scope('input_%i' % i):
for ii in xrange(dim_t):
model['hx_%i_%i' %
(i,
ii)] = model['hx_%i' %
ii] if i == 0 else model['hh_%i_%i' %
(i - 1, ii)]
with tf.name_scope('inputgate_%i' % i):
model['hWi_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWi_%i' % i)
model['hBi_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='hBi_%i' % i)
for ii in xrange(dim_t):
model['hi_%i_%i' % (i, ii)] = tf.nn.sigmoid(
tf.add(
tf.matmul(model['hx_%i_%i' % (i, ii)],
model['hWi_%i' % i]),
model['hBi_%i' % i]),
name='hi_%i_%i' % (i, ii))
with tf.name_scope('forgetgate_%i' % i):
model['hWf_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWf_%i' % i)
model['hBf_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='hBf_%i' % i)
for ii in xrange(dim_t):
model['hf_%i_%i' % (i, ii)] = tf.nn.sigmoid(
tf.add(
tf.matmul(model['hx_%i_%i' % (i, ii)],
model['hWf_%i' % i]),
model['hBf_%i' % i]),
name='hf_%i_%i' % (i, ii))
with tf.name_scope('outputgate_%i' % i):
model['hWo_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWo_%i' % i)
model['hBo_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='hBo_%i' % i)
for ii in xrange(dim_t):
model['ho_%i_%i' % (i, ii)] = tf.nn.sigmoid(
tf.add(
tf.matmul(model['hx_%i_%i' % (i, ii)],
model['hWo_%i' % i]),
model['hBo_%i' % i]),
name='ho_%i_%i' % (i, ii))
with tf.name_scope('cellstate_%i' % i):
model['hWc_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWc_' + str(i))
model['hBc_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='hBc_' + str(i))
for ii in xrange(dim_t):
model['hcc_%i_%i' % (i, ii)] = model[
'pc_%i_%i' %
(i, dim_t - 1)] if ii == 0 else model['hc_%i_%i' %
(i, ii - 1)]
model['hc_%i_%i' % (i, ii)] = tf.select(
tf.equal(model['hxi_%i' % ii],
tf.zeros([dim_b], tf.int32)),
model['hcc_%i_%i' % (i, ii)],
tf.add(
tf.mul(model['hf_%i_%i' % (i, ii)],
model['hcc_%i_%i' % (i, ii)]),
tf.mul(
model['hi_%i_%i' % (i, ii)],
tf.nn.tanh(
tf.add(
tf.matmul(model['hx_%i_%i' % (i, ii)],
model['hWc_%i' % i]),
model['hBc_%i' % i])))),
name='hc_%i_%i' % (i, ii))
with tf.name_scope('attention_%i' % i):
model['hWa_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWa_%i' % i)
model['hBa_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_t, 1], stddev=1.0 / dim_t),
name='hBa_%i' % i)
for ii in xrange(dim_t):
model['hat_%i_%i' % (i, ii)] = tf.nn.softmax(
tf.add(
tf.reshape(
tf.transpose(
tf.batch_matmul(
model['hm_%i' % i],
tf.reshape(
tf.transpose(
tf.matmul(
model['hWa_%i' % i],
tf.transpose(
model['hc_%i_%i' %
(i, ii)]))),
[dim_b, dim_i, 1]))),
[dim_t, dim_b]), model['hBa_%i' % i]),
name='hat_%i_%i' % (i, ii))
model['hcx_%i_%i' %
(i, ii)] = tf.reshape(tf.batch_matmul(
tf.reshape(
tf.transpose(model['hat_%i_%i' % (i, ii)]),
[dim_b, 1, dim_t]), model['hm_%i' % i]),
[dim_b, dim_i],
name='hcx_%i_%i' % (i, ii))
with tf.name_scope('hidden_%i' % i):
model['hWx_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWx_%i' % i)
model['hWz_%i' % i] = tf.Variable(tf.truncated_normal(
[dim_i, dim_i], stddev=1.0 / dim_i),
name='hWz_%i' % i)
model['hBz_%i' % i] = tf.Variable(tf.truncated_normal(
[1, dim_i], stddev=1.0 / dim_i),
name='hBz_%i' % i)
for ii in xrange(dim_t):
model['hz_%i_%i' % (i, ii)] = tf.add(tf.add(
tf.matmul(model['hcx_%i_%i' % (i, ii)],
model['hWx_%i' % i]),
tf.matmul(model['hc_%i_%i' % (i, ii)],
model['hWz_%i' % i])),
model['hBz_%i' % i],
name='hz_%i_%i' %
(i, ii))
with tf.name_scope('output_%i' % i):
for ii in xrange(dim_t):
model['hh_%i_%i' % (i, ii)] = tf.mul(
model['ho_%i_%i' % (i, ii)],
tf.nn.tanh(model['hz_%i_%i' % (i, ii)]),
name='hh_%i_%i' % (i, ii))
with tf.name_scope('output'):
for ii in xrange(dim_t):
model['hh_%i' % ii] = model['hh_%i_%i' % (dim_d - 1, ii)]
with tf.name_scope('meansquared'):
for ii in xrange(dim_t):
model['hms_%i' %
ii] = tf.select(tf.equal(model['hxi_%i' % ii],
tf.zeros([dim_b], tf.int32)),
tf.zeros([dim_b], tf.float32),
tf.reduce_sum(
tf.square(
tf.sub(model['hy_%i' % ii],
model['hh_%i' % ii])),
[1]),
name='hms_%i' % ii)
model['hms'] = tf.reduce_sum(tf.add_n(
[model['hms_%i' % ii] for ii in xrange(dim_t)]),
name='hms')
model['shms'] = tf.scalar_summary(model['hms'].name, model['hms'])
with tf.name_scope('classification'):
with tf.name_scope('label'):
model['clabel'] = tf.placeholder(tf.float32, [dim_b, dim_c],
name='clabel')
for i in xrange(dim_n):
with tf.name_scope('layer_%i' % i):
model['cW_%i' % i] = tf.Variable(
tf.truncated_normal([2 * dim_i, 2 * dim_i],
stddev=0.5 / dim_i),
name='cW_%i' %
i) if i != dim_n - 1 else tf.Variable(tf.truncated_normal(
[2 * dim_i, dim_c], stddev=1.0 / dim_c),
name='cW_%i' % i)
model['cB_%i' % i] = tf.Variable(
tf.truncated_normal([1, 2 * dim_i], stddev=0.5 / dim_i),
name='cB_%i' % i) if i != dim_n - 1 else tf.Variable(
tf.truncated_normal([1, dim_c], stddev=1.0 / dim_c),
name='cB_%i' % i)
model['cx_%i' %
i] = tf.concat(1, [
model['ph_%i' % (dim_t - 1)], model['hh_%i' %
(dim_t - 1)]
],
name='cx_%i' %
i) if i == 0 else model['cy_%i' % (i - 1)]
model['cy_%i' % i] = tf.add(tf.matmul(model['cx_%i' % i],
model['cW_%i' % i]),
model['cB_%i' % i],
name='cy_%i' % i)
with tf.name_scope('output'):
model['output'] = tf.nn.softmax(model['cy_%i' % (dim_n - 1)],
name='output')
with tf.name_scope('crossentropy'):
model['cce'] = tf.reduce_sum(
-tf.mul(model['clabel'], tf.log(model['output'])), name='cce')
model['scce'] = tf.scalar_summary(model['cce'].name, model['cce'])
model['gsms'] = tf.Variable(0, trainable=False, name='gsms')
model['lrms'] = tf.train.exponential_decay(lrate_ms,
model['gsms'],
dstep_ms,
drate_ms,
staircase=False,
name='lrms')
model['tms'] = optim_ms(model['lrms']).minimize(model['pms'] +
model['hms'],
global_step=model['gsms'],
name='tms')
model['gsce'] = tf.Variable(0, trainable=False, name='gsce')
model['lrce'] = tf.train.exponential_decay(lrate_ce,
model['gsce'],
dstep_ce,
drate_ce,
staircase=False,
name='lrce')
model['tce'] = optim_ce(model['lrce']).minimize(model['cce'],
global_step=model['gsce'],
name='tce')
return model
'''
scope = 'encode_x'
x_hat_encode = make_conv_net(x_hat, scope)
#x_hat_inv_mag = tf.rsqrt(tf.clip_by_value(tf.reduce_sum(tf.square(x_hat_encode),1,keep_dims=True),eps,float("inf")))
cos_sim_list = []
if not tie:
scope = 'encode_x_i'
for i in range(n_samples):
x_i_encode = make_conv_net(x_i[:, i, :, :, :], scope, tie or i > 0,
not x_i_learn)
x_i_inv_mag = tf.rsqrt(
tf.clip_by_value(
tf.reduce_sum(tf.square(x_i_encode), 1, keep_dims=True), eps,
float("inf")))
dotted = tf.squeeze(
tf.batch_matmul(tf.expand_dims(x_hat_encode, 1),
tf.expand_dims(x_i_encode, 2)), [
1,
])
cos_sim_list.append(dotted * x_i_inv_mag)
#*x_hat_inv_mag
cos_sim = tf.concat(1, cos_sim_list)
tf.histogram_summary('cos sim', cos_sim)
weighting = tf.nn.softmax(cos_sim)
label_prob = tf.squeeze(tf.batch_matmul(tf.expand_dims(weighting, 1), y_i))
tf.histogram_summary('label prob', label_prob)
top_k = tf.nn.in_top_k(label_prob, y_hat_ind, 1)
acc = tf.reduce_mean(tf.to_float(top_k))
tf.scalar_summary('train avg accuracy', acc)
correct_prob = tf.reduce_sum(
tf.log(tf.clip_by_value(label_prob, eps, 1.0)) * y_hat, 1)
def __call__(self, inputs, state, scope=None):
scope = scope or type(self).__name__
# It's always a good idea to scope variables in functions lest they
# be defined elsewhere!
input_size = inputs.get_shape()[1]
#print('Input size: ' , input_size)
with tf.variable_scope(scope):
### YOUR CODE HERE (~20-30 lines)
W_c = tf.get_variable(
"W_c", (input_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
U_c = tf.get_variable(
"U_c", (self.state_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
b_c = tf.get_variable("b_c", (self.state_size),
initializer=tf.constant_initializer(0))
W_o = tf.get_variable(
"W_o", (input_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
U_o = tf.get_variable(
"U_o", (self.state_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
b_o = tf.get_variable("b_o", (self.state_size),
initializer=tf.constant_initializer(0))
W_i = tf.get_variable(
"W_i", (input_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
U_i = tf.get_variable(
"U_i", (self.state_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
b_i = tf.get_variable("b_i", (self.state_size),
initializer=tf.constant_initializer(0))
W_f = tf.get_variable(
"W_f", (input_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
U_f = tf.get_variable(
"U_f", (self.state_size, self.state_size),
initializer=tf.contrib.layers.xavier_initializer())
b_f = tf.get_variable("b_f", (self.state_size),
initializer=tf.constant_initializer(0))
o_t = tf.sigmoid(
tf.batch_matmul(inputs, W_o) + tf.batch_matmul(state[0], U_o) +
b_c)
f_t = tf.sigmoid(
tf.batch_matmul(inputs, W_f) + tf.batch_matmul(state[0], U_f) +
b_f)
i_t = tf.sigmoid(
tf.batch_matmul(inputs, W_i) + tf.batch_matmul(state[0], U_i) +
b_i)
c_t_tilde = tf.tanh(
tf.batch_matmul(inputs, W_c) + tf.batch_matmul(state[0], U_c) +
b_c)
c_t = state[1] * f_t + i_t * c_t_tilde
h_t = o_t * tf.tanh(c_t)
#o_t = tf.tanh(tf.matmul(inputs,U_o)+ r_t*tf.matmul(state,W_o) + b_o)
new_state = [h_t, c_t]
### END YOUR CODE ###
# For a GRU, the output and state are the same (N.B. this isn't true
# for an LSTM, though we aren't using one of those in our
# assignment)
output = new_state
return h_t, new_state
def __init__(self,
hidden_num,
inputs,
seq_len=None,
cell=None,
optimizer=None,
reverse=True,
decode_without_input=True):
"""
Args:
hidden_num : number of hidden elements of each LSTM unit.
inputs : a list of input tensors with size
(batch_num x elem_num)
cell : an rnn cell object (the default option
is `tf.python.ops.rnn_cell.LSTMCell`)
optimizer : optimizer for rnn (the default option is
`tf.train.AdamOptimizer`)
reverse : Option to decode in reverse order.
decode_without_input : Option to decode without input.
"""
self.batch_num = inputs[0].get_shape().as_list()[0]
self.elem_num = inputs[0].get_shape().as_list()[1]
if cell is None:
self._enc_cell = LSTMCell(hidden_num)
self._dec_cell = LSTMCell(hidden_num)
else:
self._enc_cell = cell
self._dec_cell = cell
with tf.variable_scope('encoder'):
self.z_codes, self.enc_state = tf.nn.dynamic_rnn(
self._enc_cell,
inputs,
sequence_length=seq_len,
dtype=tf.float32)
self.enc_state = tf.identity(self.enc_state, name='enc_state')
with tf.variable_scope('decoder') as vs:
dec_weight_ = tf.Variable(tf.truncated_normal(
[hidden_num, self.elem_num], dtype=tf.float32),
name="dec_weight")
dec_bias_ = tf.Variable(tf.constant(0.1,
shape=[self.elem_num],
dtype=tf.float32),
name="dec_bias")
if decode_without_input:
dec_inputs = [
tf.zeros(tf.shape(inputs[0]), dtype=tf.float32)
for _ in range(len(inputs))
]
dec_outputs, dec_state = tf.nn.rnn(
self._dec_cell,
dec_inputs,
initial_state=self.enc_state,
sequence_length=seq_len,
dtype=tf.float32)
"""the shape of each tensor
dec_output_ : (step_num x hidden_num)
dec_weight_ : (hidden_num x elem_num)
dec_bias_ : (elem_num)
output_ : (step_num x elem_num)
input_ : (step_num x elem_num)
"""
if reverse:
dec_outputs = dec_outputs[::-1]
dec_output_ = tf.transpose(tf.pack(dec_outputs), [1, 0, 2])
dec_weight_ = tf.tile(tf.expand_dims(dec_weight_, 0),
[self.batch_num, 1, 1])
self.output_ = tf.batch_matmul(dec_output_,
dec_weight_) + dec_bias_
else:
dec_state = self.enc_state
dec_input_ = tf.zeros(tf.shape(inputs[0]), dtype=tf.float32)
dec_outputs = []
for step in range(len(inputs)):
if step > 0: vs.reuse_variables()
dec_input_, dec_state = self._dec_cell(
dec_input_, dec_state)
dec_input_ = tf.matmul(dec_input_, dec_weight_) + dec_bias_
dec_outputs.append(dec_input_)
if reverse:
dec_outputs = dec_outputs[::-1]
self.output_ = tf.transpose(tf.pack(dec_outputs), [1, 0, 2])
self.input_ = tf.transpose(tf.pack(inputs), [1, 0, 2])
self.loss = tf.reduce_mean(tf.square(self.input_ - self.output_))
if optimizer is None:
self.train = tf.train.AdamOptimizer().minimize(self.loss)
else:
self.train = optimizer.minimize(self.loss)
biases = {
'out': tf.Variable(tf.random_normal([n_classes],dtype=tf.float32))
}
# need to get a prediction for each sentence
# get the vector representation of each word
#pred1 = np.mean(x1, axis=1)#conv_net(x1, weights, biases, keep_prob)
#pred2 = np.mean(x2, axis=1)#conv_net(x2, weights, biases, keep_prob)
# concatenate both representations
out = tf.concat(1, [x1, x2])#[pred1, pred2])
# predict the relation class
pred = tf.add(tf.batch_matmul(out, weights['out']), biases['out'])
print(tf.shape(pred))
# define loss and optimizer
cost = tf.reduce_mean(tf.nn.softmax_cross_entropy_with_logits(logits=pred, labels=y))
optimizer = tf.train.AdamOptimizer(learning_rate=learning_rate).minimize(cost)
# Evaluate model
correct_pred = tf.equal(tf.argmax(pred, 1), tf.argmax(y, 1))
accuracy = tf.reduce_mean(tf.cast(correct_pred, tf.float32))
# initializing all variables
init = tf.global_variables_initializer()
# launch the graph
saver = tf.train.Saver(tf.global_variables(), max_to_keep=1)
def batch_dot(x, y, axes=None):
"""Batchwise dot product.
`batch_dot` is used to compute dot product of `x` and `y` when
`x` and `y` are data in batch, i.e. in a shape of
`(batch_size, :)`.
`batch_dot` results in a tensor or variable with less dimensions
than the input. If the number of dimensions is reduced to 1,
we use `expand_dims` to make sure that ndim is at least 2.
# Arguments
x, y: Keras tensors or variables with `ndim >= 2`
axes: list of (or single) int with target dimensions.
The lengths of `axes[0]` and `axes[1]` should be the same.
# Returns
A tensor with shape equal to the concatenation of `x`'s shape
(less the dimension that was summed over) and `y`'s shape
(less the batch dimension and the dimension that was summed over).
If the final rank is 1, we reshape it to `(batch_size, 1)`.
# Examples
Assume `x = [[1, 2], [3, 4]]` and `y = [[5, 6], [7, 8]]`
`batch_dot(x, y, axes=1) = [[17, 53]]` which is the main diagonal
of `x.dot(y.T)`, although we never have to calculate the off-diagonal
elements.
Shape inference:
Let `x`'s shape be `(100, 20)` and `y`'s shape be `(100, 30, 20)`.
If `axes` is (1, 2), to find the output shape of resultant tensor,
loop through each dimension in `x`'s shape and `y`'s shape:
* `x.shape[0]` : 100 : append to output shape
* `x.shape[1]` : 20 : do not append to output shape,
dimension 1 of `x` has been summed over. (`dot_axes[0]` = 1)
* `y.shape[0]` : 100 : do not append to output shape,
always ignore first dimension of `y`
* `y.shape[1]` : 30 : append to output shape
* `y.shape[2]` : 20 : do not append to output shape,
dimension 2 of `y` has been summed over. (`dot_axes[1]` = 2)
`output_shape` = `(100, 30)`
```python
>>> x_batch = K.ones(shape=(32, 20, 1))
>>> y_batch = K.ones(shape=(32, 30, 20))
>>> xy_batch_dot = K.batch_dot(x_batch, y_batch, axes=[1, 2])
>>> K.int_shape(xy_batch_dot)
(32, 1, 30)
```
"""
if isinstance(axes, int):
axes = (axes, axes)
#print('1')
if ndim(x) == 2 and ndim(y) == 2:
if tf_major_version >= 1:
if axes[0] == axes[1]:
out = tf.reduce_sum(tf.multiply(x, y), axes[0])
else:
out = tf.reduce_sum(tf.multiply(tf.transpose(x, [1, 0]), y), axes[1])
else:
if axes[0] == axes[1]:
out = tf.reduce_sum(tf.mul(x, y), axes[0])
else:
out = tf.reduce_sum(tf.mul(tf.transpose(x, [1, 0]), y), axes[1])
else:
if axes is not None:
#print('2')
adj_x = None if axes[0] == ndim(x) - 1 else True
adj_y = True if axes[1] == ndim(y) - 1 else None
else:
#print('3')
adj_x = None
adj_y = None
# TODO: remove later.
if hasattr(tf, 'batch_matmul'):
try:
out = tf.batch_matmul(x, y, adj_a=adj_x, adj_b=adj_y)
#print('4')
except TypeError:
out = tf.batch_matmul(x, y, adj_x=adj_x, adj_y=adj_y)
else:
out = tf.matmul(x, y, adjoint_a=adj_x, adjoint_b=adj_y)
if ndim(out) == 1:
out = expand_dims(out, 1)
return out
def __init__(self, is_training, word_embeddings, settings):
self.num_steps = num_steps = settings.num_steps
self.vocab_size = vocab_size = settings.vocab_size
self.num_classes = num_classes = settings.num_classes
self.gru_size = gru_size = settings.gru_size
self.big_num = big_num = settings.big_num
self.input_word = tf.placeholder(dtype=tf.int32,
shape=[None, num_steps],
name='input_word')
self.input_pos1 = tf.placeholder(dtype=tf.int32,
shape=[None, num_steps],
name='input_pos1')
self.input_pos2 = tf.placeholder(dtype=tf.int32,
shape=[None, num_steps],
name='input_pos2')
self.absolute_pos1 = tf.placeholder(dtype=tf.int32,
shape=[None, num_steps],
name='absolute_pos1')
self.absolute_pos2 = tf.placeholder(dtype=tf.int32,
shape=[None, num_steps],
name='absolute_pos2')
self.input_y = tf.placeholder(dtype=tf.float32,
shape=[None, num_classes],
name='input_y')
self.total_shape = tf.placeholder(dtype=tf.int32,
shape=[big_num + 1],
name='total_shape')
total_num = self.total_shape[-1]
word_embedding = tf.get_variable(initializer=word_embeddings,
name='word_embedding')
pos1_embedding = tf.get_variable('pos1_embedding',
[settings.pos_num, settings.pos_size])
pos2_embedding = tf.get_variable('pos2_embedding',
[settings.pos_num, settings.pos_size])
attention_w = tf.get_variable('attention_omega', [gru_size, 1])
sen_a = tf.get_variable('attention_A', [gru_size])
sen_r = tf.get_variable('query_r', [gru_size, 1])
relation_embedding = tf.get_variable('relation_embedding',
[self.num_classes, gru_size])
sen_d = tf.get_variable('bias_d', [self.num_classes])
gru_cell_forward = tf.nn.rnn_cell.GRUCell(gru_size)
gru_cell_backward = tf.nn.rnn_cell.GRUCell(gru_size)
if is_training and settings.keep_prob < 1:
gru_cell_forward = tf.nn.rnn_cell.DropoutWrapper(
gru_cell_forward, output_keep_prob=settings.keep_prob)
gru_cell_backward = tf.nn.rnn_cell.DropoutWrapper(
gru_cell_backward, output_keep_prob=settings.keep_prob)
cell_forward = tf.nn.rnn_cell.MultiRNNCell([gru_cell_forward] *
settings.num_layers)
cell_backward = tf.nn.rnn_cell.MultiRNNCell([gru_cell_backward] *
settings.num_layers)
sen_repre = []
sen_alpha = []
sen_s = []
sen_out = []
self.prob = []
self.predictions = []
self.loss = []
self.accuracy = []
self.total_loss = 0.0
self._initial_state_forward = cell_forward.zero_state(
total_num, tf.float32)
self._initial_state_backward = cell_backward.zero_state(
total_num, tf.float32)
# embedding layer
inputs_forward = tf.concat(2, [
tf.nn.embedding_lookup(word_embedding, self.input_word),
tf.nn.embedding_lookup(pos1_embedding, self.input_pos1),
tf.nn.embedding_lookup(pos2_embedding, self.input_pos2)
])
inputs_backward = tf.concat(2, [
tf.nn.embedding_lookup(word_embedding,
tf.reverse(self.input_word, [False, True])),
tf.nn.embedding_lookup(pos1_embedding,
tf.reverse(self.input_pos1, [False, True])),
tf.nn.embedding_lookup(pos1_embedding,
tf.reverse(self.input_pos2, [False, True]))
])
outputs_forward = []
state_forward = self._initial_state_forward
# Bi-GRU layer
with tf.variable_scope('GRU_FORWARD'):
for step in range(num_steps):
if step > 0:
tf.get_variable_scope().reuse_variables()
(cell_output_forward,
state_forward) = cell_forward(inputs_forward[:, step, :],
state_forward)
outputs_forward.append(cell_output_forward)
outputs_backward = []
state_backward = self._initial_state_backward
with tf.variable_scope('GRU_BACKWARD'):
for step in range(num_steps):
if step > 0:
tf.get_variable_scope().reuse_variables()
(cell_output_backward,
state_backward) = cell_backward(inputs_backward[:, step, :],
state_backward)
outputs_backward.append(cell_output_backward)
output_forward = tf.reshape(tf.concat(1, outputs_forward),
[total_num, num_steps, gru_size])
output_backward = tf.reverse(
tf.reshape(tf.concat(1, outputs_backward),
[total_num, num_steps, gru_size]), [False, True, False])
# word-level attention layer
output_h = tf.add(output_forward, output_backward)
#attention_r = tf.reshape(tf.batch_matmul(tf.reshape(tf.nn.softmax(tf.reshape(tf.matmul(tf.reshape(tf.tanh(output_h),[total_num*num_steps,gru_size]),attention_w),[total_num,num_steps])),[total_num,1,num_steps]),output_h),[total_num,gru_size])
attention_r = tf.reshape(
tf.batch_matmul(
tf.reshape(tf.cast(self.absolute_pos1, tf.float32),
[total_num, 1, num_steps]), output_h),
[total_num, gru_size])
# sentence-level attention layer
for i in range(big_num):
sen_repre.append(
tf.tanh(attention_r[self.total_shape[i]:self.total_shape[i +
1]]))
batch_size = self.total_shape[i + 1] - self.total_shape[i]
sen_alpha.append(
tf.reshape(
tf.nn.softmax(
tf.reshape(
tf.matmul(tf.mul(sen_repre[i], sen_a), sen_r),
[batch_size])), [1, batch_size]))
sen_s.append(
tf.reshape(tf.matmul(sen_alpha[i], sen_repre[i]),
[gru_size, 1]))
sen_out.append(
tf.add(
tf.reshape(tf.matmul(relation_embedding, sen_s[i]),
[self.num_classes]), sen_d))
self.prob.append(tf.nn.softmax(sen_out[i]))
with tf.name_scope("output"):
self.predictions.append(
tf.argmax(self.prob[i], 0, name="predictions"))
with tf.name_scope("loss"):
self.loss.append(
tf.reduce_mean(
tf.nn.softmax_cross_entropy_with_logits(
sen_out[i], self.input_y[i])))
if i == 0:
self.total_loss = self.loss[i]
else:
self.total_loss += self.loss[i]
#tf.summary.scalar('loss',self.total_loss)
#tf.scalar_summary(['loss'],[self.total_loss])
with tf.name_scope("accuracy"):
self.accuracy.append(
tf.reduce_mean(tf.cast(
tf.equal(self.predictions[i],
tf.argmax(self.input_y[i], 0)), "float"),
name="accuracy"))
#tf.summary.scalar('loss',self.total_loss)
tf.scalar_summary('loss', self.total_loss)
#regularization
self.l2_loss = tf.contrib.layers.apply_regularization(
regularizer=tf.contrib.layers.l2_regularizer(0.0001),
weights_list=tf.trainable_variables())
self.final_loss = self.total_loss + self.l2_loss
tf.scalar_summary('l2_loss', self.l2_loss)
tf.scalar_summary('final_loss', self.final_loss)
def conditional(Xnew, X, kern, f, full_cov=False, q_sqrt=None, whiten=False):
"""
Given F, representing the GP at the points X, produce the mean and
(co-)variance of the GP at the points Xnew.
Additionally, there my be Gaussian uncertainty about F as represented by
q_sqrt. In this case `f` represents the mean of the distribution and
q_sqrt the square-root of the covariance.
Additionally, the GP may have been centered (whitened) so that
p(v) = N( 0, I)
f = L v
thus
p(f) = N(0, LL^T) = N(0, K).
In this case 'f' represents the values taken by v.
The method can either return the diagonals of the covariance matrix for
each output of the full covariance matrix (full_cov).
We assume K independent GPs, represented by the columns of f (and the
last dimension of q_sqrt).
- Xnew is a data matrix, size N x D
- X are data points, size M x D
- kern is a GPflow kernel
- f is a data matrix, M x K, representing the function values at X, for K functions.
- q_sqrt (optional) is a matrix of standard-deviations or Cholesky
matrices, size M x K or M x M x K
- whiten (optional) is a boolean: whether to whiten the representation
as described above.
These functions are now considered deprecated, subsumed into this one:
gp_predict
gaussian_gp_predict
gp_predict_whitened
gaussian_gp_predict_whitened
"""
# compute kernel stuff
num_data = tf.shape(X)[0]
Kmn = kern.K(X, Xnew)
Kmm = kern.K(X) + eye(num_data) * settings.numerics.jitter_level
Lm = tf.cholesky(Kmm)
# Compute the projection matrix A
A = tf.matrix_triangular_solve(Lm, Kmn, lower=True)
# compute the covariance due to the conditioning
if full_cov:
fvar = kern.K(Xnew) - tf.matmul(A, A, transpose_a=True)
shape = tf.pack([tf.shape(f)[1], 1, 1])
else:
fvar = kern.Kdiag(Xnew) - tf.reduce_sum(tf.square(A), 0)
shape = tf.pack([tf.shape(f)[1], 1])
fvar = tf.tile(tf.expand_dims(fvar, 0), shape) # D x N x N or D x N
# another backsubstitution in the unwhitened case
if not whiten:
A = tf.matrix_triangular_solve(tf.transpose(Lm), A, lower=False)
# construct the conditional mean
fmean = tf.matmul(tf.transpose(A), f)
if q_sqrt is not None:
if q_sqrt.get_shape().ndims == 2:
LTA = A * tf.expand_dims(tf.transpose(q_sqrt), 2) # D x M x N
elif q_sqrt.get_shape().ndims == 3:
L = tf.matrix_band_part(tf.transpose(q_sqrt, (2, 0, 1)), -1,
0) # D x M x M
A_tiled = tf.tile(tf.expand_dims(A, 0),
tf.pack([tf.shape(f)[1], 1, 1]))
LTA = tf.batch_matmul(L, A_tiled, adj_x=True) # D x M x N
else: # pragma: no cover
raise ValueError("Bad dimension for q_sqrt: %s" %
str(q_sqrt.get_shape().ndims))
if full_cov:
fvar = fvar + tf.batch_matmul(LTA, LTA, adj_x=True) # D x N x N
else:
fvar = fvar + tf.reduce_sum(tf.square(LTA), 1) # D x N
fvar = tf.transpose(fvar) # N x D or N x N x D
return fmean, fvar
q_out = tf.pack(q_out)
q_out = tf.reduce_sum(
tf.mul(q_out, tf.to_float(tf.expand_dims(Pl['question_mask'], -1))), 0)
Vatt = compute_attention(V, q_out)
x = merge_modalities(Vatt, q_out)
mc_mask = tf.to_float(tf.not_equal(Pl['mc'], a_w2i['</s>']))
norm_mask = tf.expand_dims(tf.reduce_sum(mc_mask, reduction_indices=2), -1)
with tf.variable_scope('multiple_choice'):
W = tf.get_variable('W')
mc_emb = tf.nn.embedding_lookup(W, Pl['mc'])
masked_mc_out = tf.mul(tf.expand_dims(mc_mask, -1), mc_emb)
mc_out = tf.reduce_sum(masked_mc_out, reduction_indices=2) / norm_mask
out_scores = tf.batch_matmul(mc_out, tf.expand_dims(x, 1),
adj_y=True)[:, :, 0]
out_probas = tf.nn.softmax(out_scores)
normalized_ans = Pl['answers'] / tf.expand_dims(
tf.reduce_sum(Pl['answers'], reduction_indices=1), -1)
cross_entropy = tf.nn.softmax_cross_entropy_with_logits(
out_scores, normalized_ans)
cost = tf.reduce_mean(cross_entropy)
optimizer = tf.train.AdamOptimizer()
#optimizer = tf.train.GradientDescentOptimizer(0.01)
gvs = optimizer.compute_gradients(cost)
# with tf.device('/cpu:0'):
cost_s = tf.scalar_summary('train loss', cost, name='train_loss')
capped_gvs = [(tf.clip_by_value(grad, -1., 1.), var) for grad, var in gvs]
def _random_pd_matrix(self, shape):
# With probability 1 this is positive definite.
sqrt = self._rng.randn(*shape)
mat = tf.batch_matmul(sqrt, sqrt, adj_y=True)
return mat.eval()
def __init__(self, config):
entity_total = config.entity
relation_total = config.relation
batch_size = config.batch_size
sizeE = config.hidden_sizeE
sizeR = config.hidden_sizeR
margin = config.margin
with tf.name_scope("read_inputs"):
self.pos_h = tf.placeholder(tf.int32, [batch_size])
self.pos_t = tf.placeholder(tf.int32, [batch_size])
self.pos_r = tf.placeholder(tf.int32, [batch_size])
self.neg_h = tf.placeholder(tf.int32, [batch_size])
self.neg_t = tf.placeholder(tf.int32, [batch_size])
self.neg_r = tf.placeholder(tf.int32, [batch_size])
with tf.name_scope("embedding"):
self.ent_embeddings = tf.get_variable(
name="ent_embedding",
shape=[entity_total, sizeE],
initializer=tf.contrib.layers.xavier_initializer(
uniform=False))
self.rel_embeddings = tf.get_variable(
name="rel_embedding",
shape=[relation_total, sizeR],
initializer=tf.contrib.layers.xavier_initializer(
uniform=False))
self.rel_matrix = tf.get_variable(
name="rel_matrix",
shape=[relation_total, sizeE * sizeR],
initializer=tf.contrib.layers.xavier_initializer(
uniform=False))
with tf.name_scope('lookup_embeddings'):
pos_h_e = tf.reshape(
tf.nn.embedding_lookup(self.ent_embeddings, self.pos_h),
[-1, sizeE, 1])
pos_t_e = tf.reshape(
tf.nn.embedding_lookup(self.ent_embeddings, self.pos_t),
[-1, sizeE, 1])
pos_r_e = tf.reshape(
tf.nn.embedding_lookup(self.rel_embeddings, self.pos_r),
[-1, sizeR])
neg_h_e = tf.reshape(
tf.nn.embedding_lookup(self.ent_embeddings, self.neg_h),
[-1, sizeE, 1])
neg_t_e = tf.reshape(
tf.nn.embedding_lookup(self.ent_embeddings, self.neg_t),
[-1, sizeE, 1])
neg_r_e = tf.reshape(
tf.nn.embedding_lookup(self.rel_embeddings, self.neg_r),
[-1, sizeR])
matrix = tf.reshape(
tf.nn.embedding_lookup(self.rel_matrix, self.neg_r),
[-1, sizeR, sizeE])
pos_h_e = tf.reshape(tf.batch_matmul(matrix, pos_h_e), [-1, sizeR])
pos_t_e = tf.reshape(tf.batch_matmul(matrix, pos_t_e), [-1, sizeR])
neg_h_e = tf.reshape(tf.batch_matmul(matrix, neg_h_e), [-1, sizeR])
neg_t_e = tf.reshape(tf.batch_matmul(matrix, neg_t_e), [-1, sizeR])
if config.L1_flag:
pos = tf.reduce_sum(abs(pos_h_e + pos_r_e - pos_t_e),
1,
keep_dims=True)
neg = tf.reduce_sum(abs(neg_h_e + neg_r_e - neg_t_e),
1,
keep_dims=True)
else:
pos = tf.reduce_sum((pos_h_e + pos_r_e - pos_t_e)**2,
1,
keep_dims=True)
neg = tf.reduce_sum((neg_h_e + neg_r_e - neg_t_e)**2,
1,
keep_dims=True)
with tf.name_scope("output"):
self.loss = tf.reduce_sum(tf.maximum(pos - neg + margin, 0))
def batch_timesteps_linear(
input,
output_size,
bias,
bias_start=0.0,
use_l2_loss=False,
use_weight_normalization=use_weight_normalization_default,
scope=None,
tranpose_input=True,
timestep=-1):
"""Linear map: sum_i(args[i] * W[i]), where W[i] is a variable.
Args:
args: a 3D Tensor [timesteps, batch_size, input_size]
output_size: int, second dimension of W[i].
bias: boolean, whether to add a bias term or not.
bias_start: starting value to initialize the bias; 0 by default.
scope: VariableScope for the created subgraph; defaults to "Linear".
Returns:
A 2D Tensor with shape [batch x output_size] equal to
sum_i(args[i] * W[i]), where W[i]s are newly created matrices.
Raises:
ValueError: if some of the arguments has unspecified or wrong shape.
"""
# Calculate the total size of arguments on dimension 2.
if tranpose_input:
input = tf.transpose(input, [1, 0, 2])
shape_list = input.get_shape().as_list()
if len(shape_list) != 3:
raise ValueError(
'shape must be of size 3, you have inputted shape size of:',
len(shape_list))
num_timesteps = shape_list[0]
batch_size = shape_list[1]
total_arg_size = shape_list[2]
if use_l2_loss:
l_regularizer = tf.contrib.layers.l2_regularizer(1e-5)
else:
l_regularizer = None
# Now the computation.
with tf.variable_scope(scope or "Linear"):
matrix = tf.get_variable(
"Matrix", [total_arg_size, output_size],
initializer=tf.uniform_unit_scaling_initializer(),
regularizer=l_regularizer)
if use_weight_normalization: matrix = weight_normalization(matrix)
matrix = tf.tile(tf.expand_dims(matrix, 0), [num_timesteps, 1, 1])
res = tf.batch_matmul(input, matrix)
if bias:
bias_term = tf.get_variable(
"Bias", [output_size],
initializer=tf.constant_initializer(bias_start))
res = res + bias_term
if tranpose_input:
res = tf.transpose(res, [1, 0, 2])
return res
def diagonal_bilinear(inputs1, inputs2, output_size, add_bias1=True, add_bias2=True, initializer=None, scope=None, moving_params=None):
""""""
with tf.variable_scope(scope or 'DiagonalBilinear'):
# Reformat the inputs
ndims = len(inputs1.get_shape().as_list())
inputs1_shape = tf.shape(inputs1)
inputs1_bucket_size = inputs1_shape[ndims-2]
inputs1_size = inputs1.get_shape().as_list()[-1]
inputs2_shape = tf.shape(inputs2)
inputs2_bucket_size = inputs2_shape[ndims-2]
inputs2_size = inputs2.get_shape().as_list()[-1]
output_shape = []
batch_size = 1
for i in xrange(ndims-2):
batch_size *= inputs1_shape[i]
output_shape.append(inputs1_shape[i])
output_shape.append(inputs1_bucket_size)
output_shape.append(output_size)
output_shape.append(inputs2_bucket_size)
output_shape = tf.pack(output_shape)
inputs1 = tf.reshape(inputs1, tf.pack([batch_size, inputs1_bucket_size, inputs1_size]))
inputs2 = tf.reshape(inputs2, tf.pack([batch_size, inputs2_bucket_size, inputs2_size]))
# Get the matrix
if initializer is None and moving_params is None:
initializer = tf.ones_initializer
weights = tf.get_variable('Weights', [output_size, inputs1_size], initializer=initializer)
if moving_params is not None:
weights = moving_params.average(weights)
else:
tf.add_to_collection('Weights', weights)
# Get the bias
if add_bias:
bias = tf.get_variable('Biases', [output_size], initializer=tf.zeros_initializer)
if moving_params is not None:
bias = moving_params.average(bias)
bias = tf.reshape(bias, [-1,1])
else:
bias = 0
# Do the multiplications
# (bn x 1 x d) (r x d) -> (bn x r x d)
lin = tf.reshape(inputs1, [-1, 1, inputs1_size]) * weights
# (b x nr x d) (b x n x d)T -> (b x nr x n)
bilin = tf.batch_matmul(tf.reshape(lin, tf.pack([batch_size, inputs1_bucket_size*output_size, inputs2_size])),
inputs2, adj_y=True)
# (bn x r x n)
bilin = tf.reshape(bilin, tf.pack([-1, output_size, inputs2_bucket_size])) + bias
# (b x n x r x n)
bilin = tf.reshape(bilin, output_shape)
if add_bias1:
with tf.variable_scope('Input1_Biases'):
inputs1.set_shape([tf.Dimension(None), tf.Dimension(None), tf.Dimension(inputs1_size)])
bilin += tf.expand_dims(linear(inputs1, output_size, add_bias=False, moving_params=moving_params), 3)
if add_bias2:
with tf.variable_scope('Input2_Biases'):
inputs2.set_shape([tf.Dimension(None), tf.Dimension(None), tf.Dimension(inputs2_size)])
bilin += tf.expand_dims(tf.transpose(linear(inputs2, output_size, add_bias=False, moving_params=moving_params), [0, 2, 1]), 1)
return bilin
print("train count:\t%d"%(trainSet.shape[0]))
print("test count:\t%d"%(testSet.shape[0]))
print("="*20)
# embedding layer
u = tf.placeholder(tf.int32, [None, 1])
v = tf.placeholder(tf.int32, [None, 1])
r = tf.placeholder(tf.float32, [None, 1])
U = tf.Variable(tf.random_uniform([userCount, k], -0.05, 0.05))
V = tf.Variable(tf.random_uniform([itemCount, k], -0.05, 0.05))
uFactor = tf.nn.embedding_lookup(U, u)
vFactor = tf.nn.embedding_lookup(V, v)
matmul = tf.reshape(tf.batch_matmul(uFactor, vFactor, adj_x=True, adj_y=False), [-1, k*k])
merge = tf.concat(1, [tf.reshape(uFactor, [-1, k]), tf.reshape(vFactor, [-1, k]), matmul])
# fully connection layer
import math
layer1 = k * k + 2 * k
layer2 = k
scale1 = math.sqrt(6.0 / (layer1 + layer2))
scale2 = math.sqrt(6.0 / (layer2 + 1))
W1 = tf.Variable(tf.random_uniform([layer1, layer2], -scale1, scale1))
b1 = tf.Variable(tf.random_uniform([layer2], -scale1, scale1))
y1 = tf.sigmoid(tf.matmul(merge, W1) + b1)
W2 = tf.Variable(tf.random_uniform([layer2, 1], -scale2, scale2))
b2 = tf.Variable(tf.random_uniform([1], -scale2, scale2))
def add_model(self):
with tf.device('/cpu:0'):
x = tf.placeholder(tf.int32, [None, self.args.num_features])
y = tf.placeholder(tf.float32, [None])
b = tf.Variable(tf.random_uniform([1], -.1, .1))
embedding_w = tf.concat(0, [
tf.constant([[0.] * 1], dtype=tf.float32),
tf.Variable(
tf.random_uniform([self.args.max_features, 1], -.1, .1))
])
embedding_v = tf.concat(0, [
tf.constant([[0.] * self.args.dim], dtype=tf.float32),
tf.Variable(
tf.random_uniform([self.args.max_features, self.args.dim],
-.1, .1))
])
with tf.device('/gpu:0'):
embed_w = tf.nn.embedding_lookup(embedding_w, x)
embed_v = tf.nn.embedding_lookup(embedding_v, x)
w_x = tf.reduce_sum(embed_w, [1, 2])
# print w_x.get_shape()
m = tf.batch_matmul(embed_v, tf.transpose(embed_v, perm=[0, 2, 1]))
# mask = np.array([[1 if j > i else 0 for j in range(self.args.num_features) ] for i in range(self.args.num_features)]).astype(bool)
m_l = []
for i in range(self.args.num_features):
for j in range(i + 1, self.args.num_features):
m_l.append(tf.expand_dims(m[:, i, j], 1))
mm = tf.concat(1, m_l)
w_mm_dim = (self.args.num_features**2 -
self.args.num_features) / 2 # C(n, 2)
# w1_mm = tf.Variable(tf.random_uniform([w_mm_dim, 1], -.1, .1))
# b1_mm = tf.Variable(tf.random_uniform([1], -.1, .1))
w1_mm = tf.Variable(tf.random_uniform([w_mm_dim, 1], 1.0, 1.0))
b1_mm = tf.Variable(tf.random_uniform([1], 0.0, 0.0))
a1_mm = tf.matmul(mm, w1_mm) + b1_mm
z1_mm = a1_mm # linear
mmm = z1_mm
vv_x = tf.squeeze(mmm, [1])
# w_mm = tf.Variable(tf.random_uniform([w_mm_dim], -.1, .1))
# w_mm = tf.Variable(tf.constant([2.0]*mm.get_shape()[1]))
# mmm = mm * w_mm
# vv_x = tf.reduce_sum(mmm, [1])
# mm = tf.matrix_band_part(m, 0, -1) - tf.matrix_band_part(m, 0, 0)
# w_mm = tf.Variable(tf.random_uniform([self.args.num_features, self.args.num_features], -.1, .1))
# mmm = mm * w_mm
# vv_x = tf.reduce_sum(mmm, [1, 2])
# vv_x = (tf.reduce_sum(tf.batch_matmul(embed_v, tf.transpose(embed_v, perm=[0, 2, 1])), [1, 2]) \
# - tf.reduce_sum(embed_v ** 2, [1, 2]) ) #/ 2 #+ tf.reduce_sum(embed_v ** 2, [1, 2])
# print vv_x.get_shape()
all_x = b + w_x + vv_x
# print all_x.get_shape()
# this can only be used in tensorflow 0.12, due to tf.trace()
# m = tf.batch_matmul(embed, tf.transpose(embed, perm=[0, 2, 1]))
# wTx = ( tf.reduce_sum(m, [1, 2]) - tf.trace(m) ) / 2
clip_all_x = tf.clip_by_value(all_x, -35., 35.)
p = 1.0 / (1.0 + tf.exp(-clip_all_x))
clip_p = tf.clip_by_value(p, 10e-8, 1.0 - 10e-8)
# cost: logloss
cost = -tf.reduce_sum(y * tf.log(clip_p) + (1.0-y) * tf.log(1.0-clip_p)) \
+ self.args.regular * (tf.nn.l2_loss(embed_w) \
+ tf.nn.l2_loss(embed_v) + tf.nn.l2_loss(w1_mm) )
opt = tf.train.AdagradOptimizer(self.args.lr).minimize(cost)
return {'x': x, 'y': y, 'p': clip_p, 'cost': cost, 'opt': opt}
def build_model(self):
image = tf.placeholder(tf.float32, [self.batch_size, self.dim_image])
question = tf.placeholder(tf.int32, [self.batch_size, self.max_words_q])
answer = tf.placeholder(tf.int32, [self.batch_size, self.max_words_q])
question_length = tf.placeholder(tf.int32, [self.batch_size])
answer_length = tf.placeholder(tf.int32, [self.batch_size])
label = tf.placeholder(tf.float32, [self.batch_size,2])
state_que = tf.zeros([self.batch_size, self.input_embedding_size]) #zhe
state_ans = tf.zeros([self.batch_size, self.input_embedding_size]) #zhe
loss = 0.0
q_mask = tf.cast(tf.sign(question), tf.float32)
# 500 * 26
ques = tf.nn.embedding_lookup(self.embed_ques_W, question)
ques_drop = tf.nn.dropout(ques, 1-self.drop_out_rate)
# 500 * 26 * 300
ques_drop_ = tf.reshape(ques_drop, [-1, self.input_embedding_size])
ques_after_emb_linear = tf.nn.xw_plus_b(ques_drop_, self.att_Q_W, self.att_Q_b)
ques_after_emb = tf.tanh(ques_after_emb_linear)
ques_after_emb = tf.reshape(ques_after_emb, [self.batch_size, self.max_words_q, self.dim_hidden])
# 500 * 26 * 1024
image_att = tf.nn.dropout(image, 1-self.drop_out_rate)
image_att_linear = tf.nn.xw_plus_b(image_att, self.att_image_W, self.att_image_b)
image_att_emb = tf.tanh(image_att_linear)
image_emb_ = tf.reshape(image_att_emb, (self.batch_size, self.dim_hidden, 1))
q_img = tf.batch_matmul(ques_after_emb, image_emb_)
q_img_ = tf.reshape(q_img, (self.batch_size, self.max_words_q))
q_img_softmax = tf.nn.log_softmax(q_img_)
q_img_softmax = tf.mul(tf.exp(q_img_softmax), q_mask)
q_img_softmax_sum = tf.reduce_sum(q_img_softmax, 1)
q_img_softmax_sum_ = tf.expand_dims(q_img_softmax_sum, 1)
q_img_softmax_ = q_img_softmax/q_img_softmax_sum_
q_img_softmax_ = tf.reshape(q_img_softmax_, (self.batch_size, 1, self.max_words_q))
q_final = tf.batch_matmul(q_img_softmax_, ques_drop)
state_que = tf.reshape(q_final, (self.batch_size, self.input_embedding_size))
# pdb.set_trace()
ans = tf.nn.embedding_lookup(self.embed_ques_W, answer)
# inputs = tf.div(tf.reduce_sum(inputs, 1), q_a_length)
state_ans = tf.reduce_sum(ans, 1)
loss = 0.0
# state_que = inputs[0:500,:]
# multimodal (fusing question & image)
Q_drop = tf.nn.dropout(state_que, 1-self.drop_out_rate)
Q_linear = tf.nn.xw_plus_b(Q_drop, self.embed_Q_W, self.embed_Q_b)
Q_emb = tf.tanh(Q_linear)
image_drop = tf.nn.dropout(image, 1-self.drop_out_rate)
image_linear = tf.nn.xw_plus_b(image_drop, self.embed_image_W, self.embed_image_b)
image_emb = tf.tanh(image_linear)
A_drop = tf.nn.dropout(state_ans, 1-self.drop_out_rate)
A_linear = tf.nn.xw_plus_b(A_drop, self.embed_A_W, self.embed_A_b)
A_emb = tf.tanh(A_linear)
QI = tf.mul(Q_emb, image_emb)
QI_drop = tf.nn.dropout(QI, 1-self.drop_out_rate)
QI_linear = tf.nn.xw_plus_b(QI_drop, self.embed_QI_W, self.embed_QI_b)
QI_emb = tf.tanh(QI_linear)
QIA = tf.mul(QI_emb, A_emb)
scores_emb = tf.nn.xw_plus_b(QIA, self.embed_scor_W, self.embed_scor_b) #zhe
cross_entropy = tf.nn.softmax_cross_entropy_with_logits(logits=scores_emb, labels=label) #zhe
# Calculate loss
loss = tf.reduce_mean(cross_entropy)
return loss, image, question, answer, question_length, answer_length, label
def encode(self, inputs, masks, encoder_state_input):
"""
In a generalized encode function, you pass in your inputs,
masks, and an initial
hidden state input into this function.
:param inputs: Symbolic representations of your input
:param masks: this is to make sure tf.nn.dynamic_rnn doesn't iterate
through masked steps
:param encoder_state_input: (Optional) pass this as initial hidden state
to tf.nn.dynamic_rnn to build conditional representations
:return: an encoded representation of your input.
It can be context-level representation, word-level representation,
or both.
"""
#read inputs
question, paragraph = inputs
q_mask, p_mask = masks
#run biLSTM over question
with tf.variable_scope('enc_q') as scope:
encode_q_f_cell = tf.nn.rnn_cell.BasicLSTMCell(self.size)
encode_q_b_cell = tf.nn.rnn_cell.BasicLSTMCell(self.size)
q_outputs, q_end_state = tf.nn.bidirectional_dynamic_rnn(
encode_q_f_cell,
encode_q_b_cell,
question,
sequence_length=q_mask,
dtype=tf.float32) #LSTM returns a pair of hidden states (c, h)
scope.reuse_variables()
#concat end states to get question representation
q_fwd_state, q_bkwd_state = q_end_state
self.q_rep = tf.concat(
1, (q_fwd_state[0], q_bkwd_state[0])) #q rep is Batch by 2*H_size
#run biLSTM over paragraph
with tf.variable_scope('enc_p') as scope:
encode_p_f_cell = tf.nn.rnn_cell.BasicLSTMCell(self.size)
encode_p_b_cell = tf.nn.rnn_cell.BasicLSTMCell(self.size)
p_outputs, p_end_state = tf.nn.bidirectional_dynamic_rnn(
encode_p_f_cell,
encode_p_b_cell,
paragraph,
sequence_length=p_mask,
dtype=tf.float32) #condition on q rep?
scope.reuse_variables()
self.p_rep = tf.concat(2, p_outputs) #concat fwd and bkwd outputs
#calc scores between paragraph hidden states and q-rep
self.attention_weights = tf.get_variable(
"attent_weights",
shape=[2 * self.size, 2 * self.size],
dtype=tf.float32,
initializer=tf.contrib.layers.xavier_initializer())
q_attention = tf.matmul(self.q_rep, self.attention_weights)
unnorm_attention = tf.batch_matmul(
self.p_rep, tf.expand_dims(q_attention,
axis=-1)) #dims are batch by seq by 1
self.attention = unnorm_attention / tf.sqrt(
tf.reduce_sum(tf.square(unnorm_attention), axis=1, keep_dims=True))
self.knowledge_rep = tf.multiply(self.p_rep, self.attention)
return self.knowledge_rep, self.attention
batch_size = 2
memory_size = 3
n_memory_slots = 4
embedding_dim = 5
hidden_size = 6
depth = 2
shapes = {
'gru_state': (batch_size, embedding_dim),
'h': (batch_size, hidden_size),
'M': (batch_size, memory_size, n_memory_slots),
'w': (batch_size, n_memory_slots, 1),
'input': (batch_size, hidden_size)
}
def ones_variable(name):
shape = shapes[name]
return tf.Variable(np.ones(shape), dtype=tf.float32, name=name)
with tf.Session() as sess:
M = ones_variable('M')
w = ones_variable('w')
tf.initialize_all_variables().run()
print(sess.run(tf.batch_matmul(M, w)))
# x = tf.zeros([2, 2])
# m = tf.zeros([2, 2])
# g, _ = tf.nn.rnn_cell.BasicRNNCell(2)(x, x)
def extend_vector(input, r, batch_size):
"""
[a,b,c] --> [[a,a,a],[b,b,b],[c,c,c]] if D=3
"""
return tf.batch_matmul(tf.ones([batch_size, r, 1]),
tf.expand_dims(input, 1))
def key_addressing_and_value_reading(self, q_b, k_b, v_b):
# Debugging
logits_list = [None] * FLAGS.hops
probs_list = [None] * FLAGS.hops
o_list = [None] * FLAGS.hops
q_list = [None] * FLAGS.hops
self.debug_dict['logits'] = logits_list
self.debug_dict['probs'] = probs_list
self.debug_dict['o_list'] = o_list
self.debug_dict['q_list'] = q_list
for h in range(FLAGS.hops):
#
# Key Addressing
#
# [batch_sz, embedding_sz, 1]
q_temp = tf.expand_dims(q_b, -1)
# [batch_sz, mem_sz, 1]
logits = tf.batch_matmul(k_b, q_temp)
# [batch_sz, mem_sz]
logits = tf.squeeze(logits)
probs = tf.nn.softmax(logits)
# Ignore memory padding
probs = probs * self.mem_wts_b
# [batch_sz, 1]
z = tf.expand_dims(tf.reduce_sum(probs, 1), -1)
# [batch_sz, mem_sz]
probs = probs / z
#
# Value Reading
#
# [batch_sz, mem_sz, 1]
probs = tf.expand_dims(probs, -1)
# [batch_sz, embedding_sz]
o = tf.reduce_sum(probs * v_b, 1)
R = self.R_list[h]
R_b = self.Rb_list[h]
if FLAGS.value_reading == 'o':
q_b = o
elif FLAGS.value_reading == 'o.R':
q_b = tf.matmul(o, R)
elif FLAGS.value_reading == 'q + o':
q_b = q_b + o
elif FLAGS.value_reading == 'q + o.R':
q_b = q_b + tf.matmul(o, R)
elif FLAGS.value_reading == 'q.R + o':
q_b = tf.matmul(q_b, R) + o
elif FLAGS.value_reading == '(q + o).R':
if h < FLAGS.hops - 1:
q_b = tf.matmul(q_b + o, R) + R_b
else:
q_b = q_b + o
# q_b = tf.matmul(q_b + o, R) + R_b
elif FLAGS.value_reading is None or \
FLAGS.value_reading == '(q + o).R & o.R':
if h < FLAGS.hops - 1:
q_b = tf.matmul(q_b + o, R)
else:
q_b = tf.matmul(o, R)
else:
assert (False)
# Debugging
logits_list[h] = logits
probs_list[h] = probs
o_list[h] = o
q_list[h] = q_b
# q_b = tf.tanh(q_b)
return q_b
# h1 = tf.nn.elu(tf.nn.embedding_lookup_sparse(W1, sp_ids, None, combiner = "sum") + b1)
# h1 = tf.nn.relu6(tf.nn.embedding_lookup_sparse(W1, sp_ids, None, combiner = "sum") + b1)
l1 = tf.nn.embedding_lookup_sparse(W1, sp_ids, None, combiner="sum") + b1
Ze = tf.nn.embedding_lookup(Z, z_idx)
if non_linear_z:
h1 = tf.tanh(l1 + Ze)
else:
h1 = tf.tanh(l1) + Ze
## batch normalization doesn't work that well in comparison to Torch
# h1 = batch_norm_wrapper(l1, tr_ind)
h1e = tf.nn.embedding_lookup(h1, y_idx_comp)
W2e = tf.nn.embedding_lookup(W2, y_idx_prot)
b2e = tf.nn.embedding_lookup(b2, tf.squeeze(y_idx_prot, [1]))
l2 = tf.squeeze(tf.batch_matmul(h1e, W2e, adj_y=True), [1, 2]) + b2e
y_pred = l2 + b2g
## batch normalization doesn't work that well in comparison to Torch
# scale2e = tf.nn.embedding_lookup(scale2, tf.squeeze(y_idx_prot, [1]))
# beta2e = tf.nn.embedding_lookup(beta2, tf.squeeze(y_idx_prot, [1]))
# batch_mean2, batch_var2 = tf.nn.moments(l2,[0])
# z2 = (l2 - batch_mean2) / tf.sqrt(batch_var2 + epsilon)
# y_pred = scale2e * l2 + b2g
b_ratio = np.float32(Ncmpd) / np.float32(batch_size)
y_loss = tf.reduce_sum(tf.square(y_val - y_pred))
#l2_reg = lambda_reg * tf.global_norm((W1, W2))**2 + lambda_zreg * b_ratio * tf.nn.l2_loss(Ze)
l2_reg = lambda_reg * tf.global_norm(
(W1, W2))**2 + lambda_zreg * tf.nn.l2_loss(Z)
def build_generator(self):
video = tf.placeholder(
tf.float32, [self.batch_size, self.n_lstm_steps, self.dim_image])
video_mask = tf.placeholder(tf.float32,
[self.batch_size, self.n_lstm_steps])
video_flat = tf.reshape(video, [-1, self.dim_image])
image_emb = tf.nn.xw_plus_b(video_flat, self.encode_image_W,
self.encode_image_b)
image_emb = tf.reshape(
image_emb, [self.batch_size, self.n_lstm_steps, self.dim_hidden])
image_emb = tf.transpose(image_emb, [1, 0, 2])
state1 = tf.zeros([self.batch_size, self.lstm3.state_size])
h_prev = tf.zeros([self.batch_size, self.dim_hidden])
generated_words = []
current_embed = tf.zeros([self.batch_size, self.dim_hidden])
brcst_w = tf.tile(tf.expand_dims(self.embed_att_w, 0),
[self.n_lstm_steps, 1, 1]) # n x h x 1
image_part = tf.batch_matmul(
image_emb,
tf.tile(
tf.expand_dims(self.embed_att_Ua, 0),
[self.n_lstm_steps, 1, 1])) + self.embed_att_ba # n x b x h
for i in range(n_caption_step):
e = tf.tanh(tf.matmul(h_prev, self.embed_att_Wa) +
image_part) # n x b x h
e = tf.batch_matmul(e, brcst_w)
e = tf.reduce_sum(e, 2) # n x b
e_hat_exp = tf.mul(tf.transpose(video_mask), tf.exp(e)) # n x b
denomin = tf.reduce_sum(e_hat_exp, 0) # b
denomin = denomin + tf.to_float(tf.equal(denomin, 0))
alphas = tf.tile(tf.expand_dims(tf.div(e_hat_exp, denomin), 2),
[1, 1, self.dim_hidden]) # n x b x h
attention_list = tf.mul(alphas, image_emb) # n x b x h
atten = tf.reduce_sum(attention_list, 0) # b x h
if i > 0: tf.get_variable_scope().reuse_variables()
with tf.variable_scope("LSTM3") as vs:
output1, state1 = self.lstm3(
tf.concat(1, [atten, current_embed]), state1) # b x h
lstm3_variables = [
v for v in tf.all_variables() if v.name.startswith(vs.name)
]
output2 = tf.tanh(
tf.nn.xw_plus_b(tf.concat(1, [output1, atten, current_embed]),
self.embed_nn_Wp, self.embed_nn_bp)) # b x h
h_prev = output1
logit_words = tf.nn.xw_plus_b(output2, self.embed_word_W,
self.embed_word_b) # b x w
max_prob_index = tf.argmax(logit_words, 1) # b
generated_words.append(max_prob_index) # b
with tf.device("/cpu:0"):
current_embed = tf.nn.embedding_lookup(self.Wemb,
max_prob_index)
generated_words = tf.transpose(tf.pack(generated_words))
return video, video_mask, generated_words, lstm3_variables
def _transfer(self, transfer_matrix, embeddings):
return tf.batch_matmul(transfer_matrix, embeddings)
def cumsum_weights(input, W, r=D):
masked = mask(input, W, r)
triangle = ones_triangular(NUM_NOTES)
size = batch_size
return tf.batch_matmul(masked, np.array([triangle] * size))
def build_network(self):
with tf.variable_scope('encoder'):
z_mean_w = tf.Variable(
self.initializer([self._enc_cell.state_size, self.n_latent]))
z_mean_b = tf.Variable(tf.zeros([self.n_latent], dtype=tf.float32))
z_logvar_w = tf.Variable(
self.initializer([self._enc_cell.state_size, self.n_latent]))
z_logvar_b = tf.Variable(
tf.zeros([self.n_latent], dtype=tf.float32))
_, enc_state = rnn.rnn(self._enc_cell,
self.inputs,
dtype=tf.float32)
self.z_mean = tf.add(tf.matmul(enc_state, z_mean_w), z_mean_b)
self.z_log_var = tf.add(tf.matmul(enc_state, z_logvar_w),
z_logvar_b)
eps = tf.random_normal((self.batch_size, self.n_latent),
0,
1,
dtype=tf.float32)
self.z = tf.add(self.z_mean,
tf.mul(tf.sqrt(tf.exp(self.z_log_var)), eps))
with tf.variable_scope('decoder') as scope:
dec_in_w = tf.Variable(
self.initializer([self.n_latent, self._dec_cell.state_size],
dtype=tf.float32))
dec_in_b = tf.Variable(
tf.zeros([self._dec_cell.state_size], dtype=tf.float32))
dec_out_w = tf.Variable(
self.initializer([self.n_hidden, self.elem_num],
dtype=tf.float32))
dec_out_b = tf.Variable(tf.zeros([self.elem_num],
dtype=tf.float32))
initial_dec_state = self.transfer_func(
tf.add(tf.matmul(self.z, dec_in_w), dec_in_b))
dec_out, _ = seq2seq.rnn_decoder(self.inputs, initial_dec_state,
self._dec_cell)
if self.reverse:
dec_out = dec_out[::-1]
dec_output = tf.transpose(tf.pack(dec_out), [1, 0, 2])
batch_dec_out_w = tf.tile(tf.expand_dims(dec_out_w, 0),
[self.batch_size, 1, 1])
self.output = tf.nn.sigmoid(
tf.batch_matmul(dec_output, batch_dec_out_w) + dec_out_b)
scope.reuse_variables()
dec_gen_input = [
0.5 *
tf.ones([self.batch_size, self.elem_num], dtype=tf.float32)
for _ in range(self.step_num)
]
self.z_gen = tf.placeholder(tf.float32,
[self.batch_size, self.n_latent])
dec_gen_state = self.transfer_func(
tf.add(tf.matmul(self.z_gen, dec_in_w), dec_in_b))
dec_gen_out, _ = seq2seq.rnn_decoder(dec_gen_input, dec_gen_state,
self._dec_cell)
if self.reverse:
dec_gen_out = dec_gen_out[::-1]
dec_gen_output = tf.transpose(tf.pack(dec_gen_out), [1, 0, 2])
self.gen_output = tf.nn.sigmoid(
tf.batch_matmul(dec_gen_output, batch_dec_out_w) + dec_out_b)
self.inp = tf.transpose(tf.pack(self.inputs), [1, 0, 2])
self.train_loss = self.get_loss()
self.train = tf.train.AdamOptimizer(self.learning_rate).minimize(
self.train_loss)