def emulate(n, steps):
assert(n>1)
n = str(n)
# Set up emulation:
man = Manager(get_random_port(), get_random_port(), get_random_port())
man.add_brok()
m1_int_sel_in_gpot = '/a/in/gpot0,/a/in/gpot1'
m1_int_sel_out_gpot = '/a/out/gpot0,/a/out/gpot1'
m1_int_sel_in_spike = '/a/in/spike0,/a/in/spike1'
m1_int_sel_out_spike = '/a/out/spike0,/a/out/spike1'
m1_int_sel = ','.join([m1_int_sel_in_gpot, m1_int_sel_out_gpot,
m1_int_sel_in_spike, m1_int_sel_out_spike])
m1_int_sel_in = ','.join([m1_int_sel_in_gpot, m1_int_sel_in_spike])
m1_int_sel_out = ','.join([m1_int_sel_out_gpot, m1_int_sel_out_spike])
m1_int_sel_gpot = ','.join([m1_int_sel_in_gpot, m1_int_sel_out_gpot])
m1_int_sel_spike = ','.join([m1_int_sel_in_spike, m1_int_sel_out_spike])
N1_gpot = SelectorMethods.count_ports(m1_int_sel_gpot)
N1_spike = SelectorMethods.count_ports(m1_int_sel_spike)
m1 = MyModule(m1_int_sel,
m1_int_sel_in, m1_int_sel_out,
m1_int_sel_gpot, m1_int_sel_spike,
np.zeros(N1_gpot, np.float64),
np.zeros(N1_spike, int), ['interface', 'io', 'type'],
man.port_data, man.port_ctrl, man.port_time, 'm1', None,
False, True)
man.add_mod(m1)
m2_int_sel_in_gpot = '/b/in/gpot0,/b/in/gpot1'
m2_int_sel_out_gpot = '/b/out/gpot0,/b/out/gpot1'
m2_int_sel_in_spike = '/b/in/spike0,/b/in/spike1'
m2_int_sel_out_spike = '/b/out/spike0,/b/out/spike1'
m2_int_sel = ','.join([m2_int_sel_in_gpot, m2_int_sel_out_gpot,
m2_int_sel_in_spike, m2_int_sel_out_spike])
m2_int_sel_in = ','.join([m2_int_sel_in_gpot, m2_int_sel_in_spike])
m2_int_sel_out = ','.join([m2_int_sel_out_gpot, m2_int_sel_out_spike])
m2_int_sel_gpot = ','.join([m2_int_sel_in_gpot, m2_int_sel_out_gpot])
m2_int_sel_spike = ','.join([m2_int_sel_in_spike, m2_int_sel_out_spike])
N2_gpot = SelectorMethods.count_ports(m2_int_sel_gpot)
N2_spike = SelectorMethods.count_ports(m2_int_sel_spike),
m2 = MyModule(m2_int_sel,
m2_int_sel_in, m2_int_sel_out,
m2_int_sel_gpot, m2_int_sel_spike,
np.zeros(N2_gpot, np.float64),
np.zeros(N2_spike, int), ['interface', 'io', 'type'],
man.port_data, man.port_ctrl, man.port_time, 'm2', None,
False, True)
man.add_mod(m2)
# Make sure that all ports in the patterns' interfaces are set so
# that they match those of the modules:
pat12 = Pattern(m1_int_sel, m2_int_sel)
pat12.interface[m1_int_sel_out_gpot] = [0, 'in', 'gpot']
pat12.interface[m1_int_sel_in_gpot] = [0, 'out', 'gpot']
pat12.interface[m1_int_sel_out_spike] = [0, 'in', 'spike']
pat12.interface[m1_int_sel_in_spike] = [0, 'out', 'spike']
pat12.interface[m2_int_sel_in_gpot] = [1, 'out', 'gpot']
pat12.interface[m2_int_sel_out_gpot] = [1, 'in', 'gpot']
pat12.interface[m2_int_sel_in_spike] = [1, 'out', 'spike']
pat12.interface[m2_int_sel_out_spike] = [1, 'in', 'spike']
pat12['/a/out/gpot0', '/b/in/gpot0'] = 1
pat12['/a/out/gpot1', '/b/in/gpot1'] = 1
pat12['/b/out/gpot0', '/a/in/gpot0'] = 1
pat12['/b/out/gpot1', '/a/in/gpot1'] = 1
pat12['/a/out/spike0', '/b/in/spike0'] = 1
pat12['/a/out/spike1', '/b/in/spike1'] = 1
pat12['/b/out/spike0', '/a/in/spike0'] = 1
pat12['/b/out/spike1', '/a/in/spike1'] = 1
man.connect(m1, m2, pat12, 0, 1)
# To set the emulation to exit after executing a fixed number of steps,
# start it as follows and remove the sleep statement:
man.start(steps=steps)
# man.start()
# time.sleep(2)
man.stop()
return m1
def N(self):
return len(self.data)
def run_step(self, in_dict, out):
super(MyModule, self).run_step(in_dict, out)
out[:] = np.random.rand(self.N)
def run(self):
super(MyModule, self).run()
# Set up logging:
logger = setup_logger()
# Set up emulation:
man = BaseManager(get_random_port(), get_random_port())
man.add_brok()
m1 = man.add_mod(MyModule(2, 'm1 ', man.port_data, man.port_ctrl))
m2 = man.add_mod(MyModule(4, 'm2 ', man.port_data, man.port_ctrl))
m3 = man.add_mod(MyModule(3, 'm3 ', man.port_data, man.port_ctrl))
m4 = man.add_mod(MyModule(2, 'm4 ', man.port_data, man.port_ctrl))
conn12 = BaseConnectivity(2, 4, 1, m1.id, m2.id)
conn12[m1.id, :, m2.id, :] = np.ones((2, 4))
conn12[m2.id, :, m1.id, :] = np.ones((4, 2))
man.connect(m1, m2, conn12)
conn23 = BaseConnectivity(4, 3, 1, m2.id, m3.id)
conn23[m2.id, :, m3.id, :] = np.ones((4, 3))
conn23[m3.id, :, m2.id, :] = np.ones((3, 4))
# data:
# temp = np.random.randint(0, 5, self.N_in_gpot)
# for i in in_gpot_dict.keys():
# temp += np.random.randint(-1, 1, 1)*in_gpot_dict[i][0]
# out_gpot[:] = temp
out_gpot[:] = np.random.rand(self.N_gpot)
# Randomly select neurons to emit spikes:
# out_spike[:] = \
# sorted(set(np.random.randint(0, self.N_in_spike,
# np.random.randint(0, self.N_in_spike))))
out_spike[:] = np.arange(self.N_spike)
logger = base.setup_logger()
man = Manager(get_random_port(), get_random_port())
man.add_brok()
N1_gpot = N1_spike = 1
N2_gpot = N2_spike = 2
m1 = man.add_mod(MyModule(N1_gpot, N1_spike,
man.port_data, man.port_ctrl))
m2 = man.add_mod(MyModule(N2_gpot, N2_spike,
man.port_data, man.port_ctrl))
# m3 = MyModule(N, 'unconnected', man.port_data, man.port_ctrl)
# man.add_mod(m3)
# m4 = MyModule(N-2, 'unconnected', man.port_data, man.port_ctrl)
# man.add_mod(m4)
conn1 = Connectivity(N1_gpot, N1_spike, N2_gpot, N2_spike, 1, m1.id, m2.id)
# c1to2['all',:,'all',:,0,'+'] = \
# data:
# temp = np.random.randint(0, 5, self.N_in_gpot)
# for i in in_gpot_dict.keys():
# temp += np.random.randint(-1, 1, 1)*in_gpot_dict[i][0]
# out_gpot[:] = temp
out_gpot[:] = np.random.rand(self.N_gpot)
# Randomly select neurons to emit spikes:
# out_spike[:] = \
# sorted(set(np.random.randint(0, self.N_in_spike,
# np.random.randint(0, self.N_in_spike))))
out_spike[:] = np.arange(self.N_spike)
logger = base.setup_logger()
man = Manager(get_random_port(), get_random_port())
man.add_brok()
N1_gpot = N1_spike = 1
N2_gpot = N2_spike = 2
m1 = man.add_mod(MyModule(N1_gpot, N1_spike, man.port_data, man.port_ctrl))
m2 = man.add_mod(MyModule(N2_gpot, N2_spike, man.port_data, man.port_ctrl))
# m3 = MyModule(N, 'unconnected', man.port_data, man.port_ctrl)
# man.add_mod(m3)
# m4 = MyModule(N-2, 'unconnected', man.port_data, man.port_ctrl)
# man.add_mod(m4)
conn1 = Connectivity(N1_gpot, N1_spike, N2_gpot, N2_spike, 1, m1.id, m2.id)
# c1to2['all',:,'all',:,0,'+'] = \
# rand_bin_matrix((N1_gpot+N1_spike, N2_gpot+N2_spike),
# (N1_gpot+N1_spike)*(N2_gpot+N2_spike)/2, int)
def N(self):
return len(self.data)
def run_step(self, in_dict, out):
super(MyModule, self).run_step(in_dict, out)
out[:] = np.random.rand(self.N)
def run(self):
super(MyModule, self).run()
# Set up logging:
logger = setup_logger()
# Set up emulation:
man = BaseManager(get_random_port(), get_random_port())
man.add_brok()
m1 = man.add_mod(MyModule(2, 'm1 ', man.port_data, man.port_ctrl))
m2 = man.add_mod(MyModule(4, 'm2 ', man.port_data, man.port_ctrl))
m3 = man.add_mod(MyModule(3, 'm3 ', man.port_data, man.port_ctrl))
m4 = man.add_mod(MyModule(2, 'm4 ', man.port_data, man.port_ctrl))
conn12 = BaseConnectivity(2, 4, 1, m1.id, m2.id)
conn12[m1.id, :, m2.id, :] = np.ones((2, 4))
conn12[m2.id, :, m1.id, :] = np.ones((4, 2))
man.connect(m1, m2, conn12)
conn23 = BaseConnectivity(4, 3, 1, m2.id, m3.id)
conn23[m2.id, :, m3.id, :] = np.ones((4, 3))
conn23[m3.id, :, m2.id, :] = np.ones((3, 4))