def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
label='Directories', show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args', enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options', show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir'),
Item(name='fwhm', editor=CSVListEditor()),
Item(name='inputs_template'),
Item(name='meanfunc_template'),
Item(name='fsl_mat_template'),
Item(name='affine_transformation_template'),
Item(name='unwarped_brain_template'),
Item(name='warp_field_template'),
Item(name='check_func_datagrabber'),
label='Subjects', show_border=True),
Group(Item(name='standard_norm_template'),
Item(name='standard_warp_field_template'),
Item(name='standard_affine_transformation_template'),
label='Normalization', show_border=True),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',enabled_when='use_advanced_options'),
label='Advanced',show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='surf_dir'),
label='Directories', show_border=True),
Group(Item(name='run_using_plugin',enabled_when='not save_script_only'),Item('save_script_only'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args', enabled_when="run_using_plugin"),
Item(name='test_mode'), Item("timeout"),
label='Execution Options', show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir'),
Item(name='fwhm', editor=CSVListEditor()),
Item(name='inputs_template'),
Item(name='meanfunc_template'),
Item(name='fsl_mat_template'),
Item(name='check_func_datagrabber'),
label='Subjects', show_border=True),
Group(Item(name='norm_template'),
Item(name="do_segment"),
Item(name='do_anatomical_only'),
label='Normalization', show_border=True),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',enabled_when='use_advanced_options'),
label='Advanced',show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description',
show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='json_sink'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args',
enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options',
show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir', ),
Item(name='func_template'),
Item(name='check_func_datagrabber'),
Item(name='run_datagrabber_without_submitting'),
label='Subjects',
show_border=True),
Group(Item(name='TR'),
Item(name='SliceOrder', editor=CSVListEditor()),
label='Motion Correction',
show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description',
show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='surf_dir'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin',
enabled_when='not save_script_only'),
Item('save_script_only'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args',
enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options',
show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir'),
Item(name='func_template'),
Item(name='check_func_datagrabber'),
Item(name='run_datagrabber_without_submitting'),
Item(name='timepoints_to_remove'),
label='Subjects',
show_border=True),
Group(Item(name="motion_correct_node"),
Item(name='TR'),
Item(name='do_slicetiming'),
Item('order'),
Item(name='SliceOrder', editor=CSVListEditor()),
label='Motion Correction',
show_border=True),
Group(Item('csf_prob'),
Item('grey_prob'),
Item('white_prob'),
label='normalize',
show_border=True),
Group(Item(name='norm_thresh'),
Item(name='z_thresh'),
label='Artifact Detection',
show_border=True),
Group(Item(name='fwhm'), label='Smoothing', show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description',
show_border=True),
Group(Item(name='working_dir'),
Item(name='crash_dir'),
Item('sink_dir'),
Item('surf_dir'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin',
enabled_when='not save_script_only'),
Item('save_script_only'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args',
enabled_when="run_using_plugin"),
label='Execution Options',
show_border=True),
Group(Item(name='datagrabber'),
label='Subjects',
show_border=True),
Group(Item(name="motion_correct_node"),
Item(name='TR', enabled_when='not use_metadata'),
Item('use_metadata'),
Item(name='do_slicetiming'),
Item(name='SliceOrder',
editor=CSVListEditor(),
enabled_when='do_slicetiming and not use_metadata'),
Item('order', enabled_when='do_slicetiming'),
Item(name='loops',
enabled_when="motion_correct_node=='nipy' ",
editor=CSVListEditor()),
Item(name='speedup',
enabled_when="motion_correct_node=='nipy' ",
editor=CSVListEditor()),
label='Motion Correction',
show_border=True),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',
enabled_when='use_advanced_options'),
label='Advanced',
show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor, TupleEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='surf_dir'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args',
enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options',
show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
label='Subjects',
show_border=True),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',
enabled_when='use_advanced_options'),
label='Advanced',
show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='surf_dir'),
label='Directories', show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args', enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options', show_border=True),
Group(Item(name='datagrabber'),
label='Subjects', show_border=True),
Group(Item(name='target_surf'),
Item(name='surface_fwhm', editor=CSVListEditor()),
Item(name='projection_stem'),
Item(name='combine_surfaces'),
Item(name='surface_atlas'),
label='Smoothing', show_border=True),
Group(Item(name='out_type'),
Item(name='hdf5_package',
enabled_when="out_type is 'hdf5'"),
label='Output', show_border=True),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',enabled_when='use_advanced_options'),
label='Advanced',show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor, TupleEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description', show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
label='Directories', show_border=True),
Group(Item(name='run_using_plugin',enabled_when='save_script_only'),Item('save_script_only'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args', enabled_when="run_using_plugin"),
Item(name='test_mode'), Item("timeout"),
label='Execution Options', show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir'),
Item(name='dicom_dir_template'),
label='Subjects', show_border=True),
Group(Item('info_only'),
Item('use_heuristic',enabled_when="not info_only"),
Item('no_moco',enabled_when="not info_only and not use_heuristic"),
Item('heuristic_file',enabled_when="use_heuristic"),
Item('embed_meta',enabled_when='not info_only')),
buttons = [OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description', show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
label='Directories', show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args', enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options', show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
label='Subjects', show_border=True),
Group(Item(name='preproc_config'),
label='Track', show_border=True),
Group(Item("use_advanced_options"),
Item("advanced_script"),
label="Advanced",show_border=True),
buttons = [OKButton, CancelButton],
resizable=True,
width=1050)
return view
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description',
show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='surf_dir'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args',
enabled_when="run_using_plugin"),
Item(name='test_mode'),
label='Execution Options',
show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir'),
Item(name='dwi_template'),
Item(name='bval_template'),
Item(name='bvec_template'),
Item(name='check_func_datagrabber'),
Item(name='run_datagrabber_without_submitting'),
Item(name='timepoints_to_remove'),
label='Subjects',
show_border=True),
Group(Item(name='use_fieldmap'),
Item(name='field_dir', enabled_when="use_fieldmap"),
Item(name='magnitude_template',
enabled_when="use_fieldmap"),
Item(name='phase_template', enabled_when="use_fieldmap"),
Item(name='check_field_datagrabber',
enabled_when="use_fieldmap"),
Item(name='echospacing', enabled_when="use_fieldmap"),
Item(name='TE_diff', enabled_when="use_fieldmap"),
Item(name='sigma', enabled_when="use_fieldmap"),
label='Fieldmap',
show_border=True),
Group(Item('do_rotate_bvecs'),
label='Diffusion_Options',
show_border=True),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',
enabled_when='use_advanced_options'),
label='Advanced',
show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
class DataBase(HasTraits):
name = traits.Str('name')
values = traits.List([''],traits.Str)
iterable= traits.Bool(False)
if use_view:
from traitsui.api import View, Item, Group, CSVListEditor, TupleEditor, EnumEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='name'), Item(name='values', editor=CSVListEditor()), Item(name='iterable')),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
class GeomGetterWindow(Handler):
#has to do the handler thing
#for now proof of concept and notimplementederror
geometry = List(Int)
holder = Instance(NameHolder)
traits_view = View(
#Item('grid_representation', editor=InstanceEditor(), style='custom'),
Item('holder',
editor=InstanceEditor(),
style='custom',
show_label=False),
Item('geometry', editor=CSVListEditor(), label='list geometry'),
title='Specify geometry',
kind='livemodal',
buttons=OKCancelButtons,
)
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor
from traitsui.menu import OKButton, CancelButton
view = View(Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description',
show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='json_sink'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin',
enabled_when='not save_script_only'),
Item('save_script_only'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args',
enabled_when="run_using_plugin"),
Item(name='test_mode'),
Item(name='debug'),
label='Execution Options',
show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
label='Subjects',
show_border=True),
Group(Item(name='preproc_config'),
Item(name='use_custom_ROI_list_file'),
Item(name='custom_ROI_list_file',
enabled_when='use_custom_ROI_list_file'),
label='Preprocessing Info'),
Group(Item(name='use_advanced_options'),
Item(name='advanced_script',
enabled_when='use_advanced_options'),
label='Advanced',
show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
class CUBADataTypeModelView(ModelView):
"""Wraps the CUBADataType node in a ModelView for easier representation
and access.
"""
traits_view = View(
VGroup(
Item("model.name", resizable=True, enabled_when="False"),
Item("model.definition", resizable=True, enabled_when="False"),
Item("model.type", enabled_when="False"),
Item("model.shape", editor=CSVListEditor(), enabled_when="False"),
Item("model.length",
visible_when="model.type == 'string'",
enabled_when="False"),
label="CUBA Data Type",
show_border=True,
))
@on_trait_change("model.type")
def _type_updated(self, type_):
if type_ == "string":
self.model.length = 128
else:
self.model.length = None
class Demo(HasTraits):
list1 = List(Int)
list2 = List(Float)
list3 = List(Str, maxlen=3)
list4 = List(Enum('red', 'green', 'blue', 2, 3))
list5 = List(Range(low=0.0, high=10.0))
# 'low' and 'high' are used to demonstrate lists containing dynamic ranges.
low = Float(0.0)
high = Float(1.0)
list6 = List(Range(low=-1.0, high='high'))
list7 = List(Range(low='low', high='high'))
pop1 = Button("Pop from first list")
sort1 = Button("Sort first list")
# This will be str(self.list1).
list1str = Property(Str, depends_on='list1')
traits_view = \
View(
HGroup(
# This VGroup forms the column of CSVListEditor examples.
VGroup(
Item('list1', label="List(Int)",
editor=CSVListEditor(ignore_trailing_sep=False),
tooltip='options: ignore_trailing_sep=False'),
Item('list1', label="List(Int)", style='readonly',
editor=CSVListEditor()),
Item('list2', label="List(Float)",
editor=CSVListEditor(enter_set=True, auto_set=False),
tooltip='options: enter_set=True, auto_set=False'),
Item('list3', label="List(Str, maxlen=3)",
editor=CSVListEditor()),
Item('list4',
label="List(Enum('red', 'green', 'blue', 2, 3))",
editor=CSVListEditor(sep=None),
tooltip='options: sep=None'),
Item('list5', label="List(Range(low=0.0, high=10.0))",
editor=CSVListEditor()),
Item('list6', label="List(Range(low=-1.0, high='high'))",
editor=CSVListEditor()),
Item('list7', label="List(Range(low='low', high='high'))",
editor=CSVListEditor()),
springy=True,
),
# This VGroup forms the right column; it will display the
# Python str representation of the lists.
VGroup(
UItem('list1str', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list1str', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list2', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list3', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list4', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list5', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list6', editor=TextEditor(),
enabled_when='False', width=240),
UItem('list7', editor=TextEditor(),
enabled_when='False', width=240),
),
),
'_',
HGroup('low', 'high', spring, UItem('pop1'), UItem('sort1')),
Heading("Notes"),
Label("Hover over a list to see which editor options are set, "
"if any."),
Label("The editor of the first list, List(Int), uses "
"ignore_trailing_sep=False, so a trailing comma is "
"an error."),
Label("The second list is a read-only view of the first list."),
Label("The editor of the List(Float) example has enter_set=True "
"and auto_set=False; press Enter to validate."),
Label("The List(Str) example will accept at most 3 elements."),
Label("The editor of the List(Enum(...)) example uses sep=None, "
"i.e. whitespace acts as a separator."),
Label("The last two List(Range(...)) examples take one or both "
"of their limits from the Low and High fields below."),
width=720,
title="CSVListEditor Demonstration",
)
def _list1_default(self):
return [1, 4, 0, 10]
def _get_list1str(self):
return str(self.list1)
def _pop1_fired(self):
if len(self.list1) > 0:
x = self.list1.pop()
print x
def _sort1_fired(self):
self.list1.sort()
def dynamic_view(self):
return View(
Item('electrodes',
editor=TableEditor( columns =
[ObjectColumn(label='electrode',
editor=TextEditor(),
style='readonly',
editable=False,
name='strrepr'),
ObjectColumn(label='corner',
editor=CheckListEditor(
values=['','corner 1','corner 2',
'corner 3']),
style='simple',
name='corner'),
ObjectColumn(label='geometry',
editor=CSVListEditor(),
#editor=TextEditor(),
#style='readonly',
#editable=False,
name='geom_coords'),
ObjectColumn(label='channel name',
editor=TextEditor(),
name='name'),
ObjectColumn(label='ROIs',
editor=ListStrEditor(),
editable=False,
name='roi_list'),
],
selected='cur_sel',
deletable=True,
#row_factory=electrode_factory,
row_factory=self.electrode_factory,
),
show_label=False, height=350, width=700),
HGroup(
VGroup(
Label( 'Automatic labeling parameters' ),
Item( 'name_stem' ),
HGroup(
Item( 'naming_convention' ),
Item( 'grid_type' ),
),
),
#VGroup(
# Label( 'ROI identification parameters' ),
# Item('parcellation'),
# Item('error_radius'),
#),
#VGroup(
# Label('Image parameters' ),
# Item('img_dpi', label='dpi'),
# Item('img_size', label='size', editor=CSVListEditor()),
#),
),
resizable=True, kind='panel', title='modify electrodes',
#buttons=[OKButton, swap_action, label_auto_action,
# interpolate_action, save_montage_action, find_rois_action])
buttons = [self.label_auto_action, self.swap_action, OKButton],
menubar = MenuBar(
Menu( self.label_auto_action, self.add_blank_action,
self.interpolate_action, self.find_rois_action,
self.find_all_rois_action,
self.manual_reposition_action,
name='Operations',
),
Menu( self.save_montage_action, self.save_csv_action,
self.save_coronal_slice_action,
name='Save Output',
),
)
)
def create_view():
from traitsui.api import View, Item, Group, CSVListEditor, TupleEditor
from traitsui.menu import OKButton, CancelButton
view = View(
Group(Item(name='uuid', style='readonly'),
Item(name='desc', style='readonly'),
label='Description',
show_border=True),
Group(Item(name='working_dir'),
Item(name='sink_dir'),
Item(name='crash_dir'),
Item(name='surf_dir'),
label='Directories',
show_border=True),
Group(Item(name='run_using_plugin'),
Item(name='plugin', enabled_when="run_using_plugin"),
Item(name='plugin_args', enabled_when="run_using_plugin"),
Item(name='test_mode'),
Item('update_hash'),
label='Execution Options',
show_border=True),
Group(Item(name='subjects', editor=CSVListEditor()),
Item(name='base_dir', ),
Item(name='func_template'),
Item(name='check_func_datagrabber'),
Item(name='run_datagrabber_without_submitting'),
Item(name='timepoints_to_remove'),
label='Subjects',
show_border=True),
Group(Item(name='use_fieldmap'),
Item(name='field_dir', enabled_when="use_fieldmap"),
Item(name='magnitude_template', enabled_when="use_fieldmap"),
Item(name='phase_template', enabled_when="use_fieldmap"),
Item(name='check_field_datagrabber',
enabled_when="use_fieldmap"),
Item(name='echospacing', enabled_when="use_fieldmap"),
Item(name='TE_diff', enabled_when="use_fieldmap"),
Item(name='sigma', enabled_when="use_fieldmap"),
label='Fieldmap',
show_border=True),
Group(Item(name="do_despike"),
Item(name="motion_correct_node"),
Item(name='TR', enabled_when="not use_metadata"),
Item(name='do_slicetiming'),
Item(name="use_metadata"),
Item(name='SliceOrder',
editor=CSVListEditor(),
enabled_when="not use_metadata or not do_slicetiming"),
Item(name='loops',
enabled_when="motion_correct_node=='nipy' ",
editor=CSVListEditor()),
Item(name='speedup',
enabled_when="motion_correct_node=='nipy' ",
editor=CSVListEditor()),
label='Motion Correction',
show_border=True),
Group(Item(name='norm_thresh'),
Item(name='z_thresh'),
label='Artifact Detection',
show_border=True),
Group(Item(name='compcor_select'),
Item(name='num_noise_components'),
Item(name='regress_before_PCA'),
label='CompCor',
show_border=True),
Group(Item(name='reg_params'),
label='Nuisance Filtering',
show_border=True),
Group(Item(name='smooth_type'),
Item(name='fwhm', editor=CSVListEditor()),
Item(name='surface_fwhm'),
label='Smoothing',
show_border=True),
Group(Item(name='highpass_freq'),
Item(name='lowpass_freq'),
Item(name='filtering_algorithm'),
Item(name='do_whitening'),
label='Bandpass Filter',
show_border=True),
Group(Item(name='do_zscore'),
Item(name='use_advanced_options'),
Item(name='advanced_script',
enabled_when='use_advanced_options'),
Item(name='debug'),
label='Advanced',
show_border=True),
buttons=[OKButton, CancelButton],
resizable=True,
width=1050)
return view
class InfoPanel(HasTraits):
cursor = Property(Tuple)
cursor_ras = Property(Tuple)
cursor_tkr = Property(Tuple)
cursor_intensity = Float
mouse = Tuple((0.,0.,0.))
mouse_ras = Tuple((0.,0.,0.))
mouse_tkr = Tuple((0.,0.,0.))
mouse_intensity = Float
cursor_csvlist = List(Float)
cursor_ras_csvlist = List(Float)
cursor_tkr_csvlist = List(Float)
pin_tolerance = Float(7.5)
currently_showing_list = List(Instance(NullInstanceHolder))
currently_showing = Instance(NullInstanceHolder)
add_electrode_button = Button('Make new elec here')
confirm_movepin_internal_button = Button('Move elec here')
confirm_movepin_postproc_button = Button('Move postproc')
track_cursor_button = Button('Track cursor')
reset_image_button = Button('Center image')
minimum_contrast = Float( -2000 )
maximum_contrast = Float( 5000 )
traits_view = View(
VGroup(
Item('currently_showing',
editor=InstanceEditor(name='currently_showing_list'),
style='custom'),
Spring(),
HGroup(
Item('minimum_contrast', editor=TextEditor(enter_set=True,
auto_set=False, evaluate=float)),
Item('maximum_contrast', editor=TextEditor(enter_set=True,
auto_set=False, evaluate=float)),
),
Spring(),
HGroup(
Item('add_electrode_button', show_label=False),
Item('track_cursor_button', show_label=False),
Item('reset_image_button', show_label=False),
),
HGroup(
Item('confirm_movepin_internal_button', show_label=False),
Item('confirm_movepin_postproc_button', show_label=False),
),
Item('pin_tolerance'),
Spring(),
Item(name='cursor_csvlist', style='text', label='cursor',
editor=CSVListEditor(enter_set=True, auto_set=False)),
Item(name='cursor_ras_csvlist', style='text', label='cursor RAS',
editor=CSVListEditor(enter_set=True, auto_set=False)),
Item(name='cursor_tkr_csvlist', style='text', label='cursor tkr',
editor=CSVListEditor(enter_set=True, auto_set=False)),
Item(name='cursor_intensity', style='readonly',
label='cursor intensity'),
Item(name='mouse', style='readonly', label='mouse'),
Item(name='mouse_ras', style='readonly', label='mouse RAS'),
Item(name='mouse_tkr', style='readonly', label='mouse tkr'),
Item(name='mouse_intensity', style='readonly',
label='mouse intensity'),
),
height=400, width=400,
title='ilumbumbargu',
)
def _get_cursor(self):
return tuple(self.cursor_csvlist)
def _set_cursor(self, newval):
self.cursor_csvlist = list(newval)
def _get_cursor_ras(self):
return tuple(self.cursor_ras_csvlist)
def _set_cursor_ras(self, newval):
self.cursor_ras_csvlist = list(newval)
def _get_cursor_tkr(self):
return tuple(self.cursor_tkr_csvlist)
def _set_cursor_tkr(self, newval):
self.cursor_tkr_csvlist = list(newval)
class SphereTSGUI(HasTraits):
"""
Calculate and show the sphere TS using the TraitsUI framework.
"""
default_material = 'Tungsten carbide'
m = sphere_ts.material_properties()
params = m[default_material]
params['material'] = default_material
params['a'] = 0.0381 / 2.0
params['rho'] = 1026.2
params['c'] = 1490.0
spot_freqs = [12, 18, 38, 50, 70, 120, 200, 333, 420]
spot_freqs = list(zip(spot_freqs, list(map(str, spot_freqs))))
extra_spot_freqs = List(Range(low=0., exclude_low=True),
desc='comma separated frequencies [kHz]',
label='Additional spot freqs [kHz]')
sphere_material = Str(params['material'], label='Material')
sphere_diameter = Range(low=0.,
value=params['a'] * 2 * 1000.0,
exclude_low=True,
label='Diameter [mm]')
sphere_density = Range(low=0.,
value=params['rho1'],
exclude_low=True,
label='Density [kg/m^3]')
sphere_c1 = Range(low=0.,
value=params['c1'],
exclude_low=True,
label='Longitudal sound speed [m/s]')
sphere_c2 = Range(low=0.,
value=params['c2'],
exclude_low=True,
label='Transverse sound speed [m/s]')
use_ctd = Bool(True)
use_another_material = Bool(False, label='Another material')
fluid_c = Range(low=0.,
value=params['c'],
exclude_low=True,
label='Sound speed in water [m/s]')
fluid_density = Range(low=0.,
value=params['rho'],
exclude_low=True,
label='Density of water [kg/m^3]')
fluid_temperature = Range(-2.0, 60, 10.0, label='Temperature [degC]')
fluid_salinity = Range(0.0, 60.0, 35.0, label='Salinity [PSU]')
fluid_depth = Range(0.0, 15000.0, 30.0, label='Depth [m]')
freq_start = Range(low=0.0, value=12., label='Start frequency [kHz]')
freq_end = Range(low=0.0, value=200., label='End frequency [kHz]')
averaging_bandwidth = Range(low=0.1,
value=2.5,
label='Bandwidth for averaged TS [kHz]')
CalculateButton = Action(name='Calculate', action='calculate')
AboutButton = Action(name='About', action='show_about')
EK60Button = Action(name='EK60 tables', action='show_ek60_ts')
CloseButton = Action(name='Close', action='close')
aboutDialog = AboutDialog()
ek60Dialog = EK60Dialog()
view = View(
Group(
Group(Item('sphere_diameter'),
Item('sphere_material',
style='custom',
enabled_when='not use_another_material',
editor=EnumEditor(values=list(m.keys()), cols=2)),
Item('use_another_material'),
Item('sphere_density', enabled_when='use_another_material'),
Item('sphere_c1', enabled_when='use_another_material'),
Item('sphere_c2', enabled_when='use_another_material'),
label='Sphere properties',
show_border=True),
'10', # some extra space
Group(Item('use_ctd', label='Calculate from T, S, and D'),
Item('fluid_temperature',
enabled_when='use_ctd',
style='text'),
Item('fluid_salinity', enabled_when='use_ctd', style='text'),
Item('fluid_depth', enabled_when='use_ctd', style='text'),
Item('fluid_c',
enabled_when='not use_ctd',
format_str='%.1f'),
Item('fluid_density',
enabled_when='not use_ctd',
format_str='%.1f'),
label='Environmental properties',
show_border=True),
'10', # some extra space
Group(Item('spot_freqs',
style='custom',
label='Spot frequencies [kHz]',
editor=CheckListEditor(values=spot_freqs, cols=3)),
Item('extra_spot_freqs', editor=CSVListEditor()),
Item('freq_start'),
Item('freq_end'),
Item('averaging_bandwidth'),
label='Frequencies',
show_border=True)),
resizable=True,
title='Sphere TS calculator',
buttons=[EK60Button, AboutButton, CalculateButton, CloseButton],
handler=UIHandler())