fb_cursor.execute(query) #
fb_dc = dict_cursor(fb_cursor)
for fb in fb_dc:
# print "\nProcessing:" + fb['uc_name']
if fb['obstat']:
warnings.warn(fb['fbid'] +" " + fb['uc_name'] + " is obsolete ! Not adding to fb_feature.owl.")
else:
if not fb_feature.knowsClass(fb['fbid']): # Only add class if not obsolete.
fb_feature.addClass(fb['fbid'])
tmp = re.sub("<up\>", "[",fb['uc_name'])
uc_name = re.sub("<\/up>", "]", tmp)
fb_feature.label(fb['fbid'], uc_name)
if re.match('FBtp\d+', fb['fbid']):
fb_feature.subClassOf(fb['fbid'], 'SO_0000796')
elif re.match('FBti\d+', fb['fbid']):
fb_feature.subClassOf(fb['fbid'], 'SO_0001218')
elif re.match('FBgn\d+', fb['fbid']):
fb_feature.subClassOf(fb['fbid'], 'SO_0000704')
elif re.match('FBal\d+', fb['fbid']):
fb_feature.subClassOf(fb['fbid'], 'SO_0001023')
else:
warnings.warn("Ignoring this, as doesn't look like an FB feature: %s." % fb['fbid'])
continue
time.sleep(0.1)
# vfb_ms_conn.close()
