def test_term_run(variants):
term = Term('FILTER[PASS]', None)
assert term.run(variants[0], passed = True) == False
assert term.run(variants[5], passed = True) == ['PASS']
term = Term('FILTER2', None)
assert term.run(variants[5], passed = True) == False
term = Term('GTTYPEs{0}', ['A', 'B', 'C', 'D'])
assert term.run(variants[0], passed = False) == ['HOM_REF']
term = Term('AAF[.126,]', None)
# .125
assert term.run(variants[0], passed = False) == False
assert term.run(variants[2], passed = False) == [.25]
term = Term('AAF[,.24]', None)
# .25
assert term.run(variants[0], passed = False) == [.125]
assert term.run(variants[2], passed = False) == False
term = Term('FILTER[PASS]', None)
assert term.run(variants[0], passed = False) == False
assert term.run(variants[5], passed = False) == ['PASS']
def test_term_run(variants):
term = Term("FILTER", "PASS")
assert term.run(variants[0], passed=True) == False
assert term.run(variants[5], passed=True) == ["PASS"]
term = Term("FILTER2")
assert term.run(variants[5], passed=True) == False
term = Term("GTTYPEs", None, ["0"])
term.set_samples(variants[-1])
assert term.run(variants[0], passed=False) == ["HOM_REF"]
term = Term("AAF", [0.126, None])
# .125
assert term.run(variants[0], passed=False) == False
assert term.run(variants[2], passed=False) == [0.25]
term = Term("AAF", [None, 0.24])
# .25
assert term.run(variants[0], passed=False) == [0.125]
assert term.run(variants[2], passed=False) == False
term = Term("FILTER", "PASS")
assert term.run(variants[0], passed=False) == False
assert term.run(variants[5], passed=False) == ["PASS"]