Version	Documentation	Forum

CellProfiler Analyst allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments. Included is a supervised machine learning system which can be trained to recognize complicated and subtle phenotypes, for automatic scoring of millions of cells.

Download version for Mac here: App for Mac OS

Download version for Windows here: App for Windows

The app requires JDK 1.8 to be installed (not just JRE). Check the Java path.

Please note that this is the development branch of CPA and it will be updated on regular basis.

Find all releases here.

For a head start, download example dataset here: Example Dataset for CPA (zipped)

Building CPA on your machine requires CellProfiler dependencies.

• Pandas
• Seaborn
• Scikit-learn
• Javabridge
• Verlib
• Python-bioformats

http://cellprofiler.org/CPA/

http://cellprofiler.org/wiki/index.php

CellProfiler Analyst development is discussed on the CellProfiler Forum list.

http://forum.cellprofiler.org/

Please attach sufficient information to reproduce the bug. For many bugs, it is appropriate to attach a properties file, a training set, or a screenshot.

David Dao, Adam Fraser, Vebjorn Ljosa, Thouis R. Jones, Jane Hung, Shantanu Singh, Mark Bray, Lee Kamentsky, Anne Carpenter

David Logan, Allen Goodman, Alison Kozol, Mohammad Hossein Rohban

Copyright 2016, The Broad Institute of MIT and Harvard. Distributed under the BSD license.