GitHub - GBA007/biobuilds: Curated collection of open-source bioinformatics tools

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Name		Name	Last commit message	Last commit date
Latest commit History 558 Commits
2020plus/1.1.3		2020plus/1.1.3
abyss/2.0.2		abyss/2.0.2
allpathslg/52488		allpathslg/52488
ansible/2.7.5		ansible/2.7.5
aragorn/1.2.38		aragorn/1.2.38
argtable2/2.13		argtable2/2.13
autoconf-update		autoconf-update
autoconf/2.69		autoconf/2.69
automake		automake
bamkit/16.07.06		bamkit/16.07.06
bamstats/1.25		bamstats/1.25
bamtools		bamtools
barracuda		barracuda
bcftools		bcftools
beagle-lib/2.1.2		beagle-lib/2.1.2
beast/2.4.6		beast/2.4.6
bedops		bedops
bedtools		bedtools
bfast/0.7.0a		bfast/0.7.0a
binutils		binutils
biobuilds-build		biobuilds-build
biobuilds-opt		biobuilds-opt
biobuilds		biobuilds
bioconductor-annotationdbi		bioconductor-annotationdbi
bioconductor-biobase		bioconductor-biobase
bioconductor-biocgenerics		bioconductor-biocgenerics
bioconductor-biocinstaller		bioconductor-biocinstaller
bioconductor-biocparallel		bioconductor-biocparallel
bioconductor-biostrings		bioconductor-biostrings
bioconductor-copynumber/1.18.0		bioconductor-copynumber/1.18.0
bioconductor-delayedarray/0.4.1		bioconductor-delayedarray/0.4.1
bioconductor-ebseq		bioconductor-ebseq
bioconductor-genomeinfodb		bioconductor-genomeinfodb
bioconductor-genomeinfodbdata/0.99.1		bioconductor-genomeinfodbdata/0.99.1
bioconductor-genomicalignments		bioconductor-genomicalignments
bioconductor-genomicranges		bioconductor-genomicranges
bioconductor-iranges		bioconductor-iranges
bioconductor-multtest/2.26.0		bioconductor-multtest/2.26.0
bioconductor-rsamtools		bioconductor-rsamtools
bioconductor-s4vectors		bioconductor-s4vectors
bioconductor-shortread		bioconductor-shortread
bioconductor-summarizedexperiment		bioconductor-summarizedexperiment
bioconductor-xvector		bioconductor-xvector
bioconductor-zlibbioc		bioconductor-zlibbioc
bioconductor		bioconductor
biopython		biopython
blast		blast
boost		boost
bowtie		bowtie
bowtie2		bowtie2
breakdancer/1.4.5		breakdancer/1.4.5
bwa		bwa
bz2file/0.98		bz2file/0.98
bzip2/1.0.6		bzip2/1.0.6
cachecontrol/0.11.7		cachecontrol/0.11.7
cairo		cairo
canu/1.5		canu/1.5
cgpvcf/2.2.0		cgpvcf/2.2.0
chimerascan/0.4.5a		chimerascan/0.4.5a
clark/1.2.3.1		clark/1.2.3.1
clustalomega/1.2.4		clustalomega/1.2.4
clustalw/2.1		clustalw/2.1
cmake/3.7.1		cmake/3.7.1
conda-build		conda-build
conifer/0.2.2		conifer/0.2.2
cufflinks/2.2.1		cufflinks/2.2.1
curl		curl
cutadapt		cutadapt
cycler/0.9.0		cycler/0.9.0
db		db
decorator/4.0.10		decorator/4.0.10
delly		delly
diamond/0.8.24		diamond/0.8.24
dos2unix/7.4.0		dos2unix/7.4.0
drfast/1.0.0.0		drfast/1.0.0.0
eigen		eigen
emboss		emboss
expat/2.1.0		expat/2.1.0
fasta		fasta
fastp/0.19.5		fastp/0.19.5
fastqc		fastqc
fastx-toolkit/0.0.14		fastx-toolkit/0.0.14
fontconfig		fontconfig
freebayes		freebayes
freetype/2.8		freetype/2.8
future/0.16.0		future/0.16.0
gawk/4.1.4		gawk/4.1.4
gcc_linux-ppc64le/4.8.4		gcc_linux-ppc64le/4.8.4
gcta/1.26.0		gcta/1.26.0
gdbm		gdbm
genomonfisher		genomonfisher
gettext/0.19.8.1		gettext/0.19.8.1
gfortran_linux-ppc64le/4.8.4		gfortran_linux-ppc64le/4.8.4
glib		glib
gnuplot		gnuplot
gobject-introspection/1.53.5		gobject-introspection/1.53.5
gperf/3.1		gperf/3.1
graphite2/1.3.10		graphite2/1.3.10
graphviz/2.38.0		graphviz/2.38.0
gsl		gsl

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BioBuilds is a curated collection of open-source bioinformatics tools, pre-built for Linux on both Intel x86_64 and IBM POWER8 systems as well as Mac OS X. It builds on Continuum Analytics' (mini)conda system to help deliver reproducible, versioned environments that conveniently also largely eliminates dependency hell.

For more information, please visit https://biobuilds.org.

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GBA007/biobuilds

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