Python package for calling nucleosomes using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).

Published Open Access at Genome Research: http://genome.cshlp.org/content/early/2015/08/27/gr.192294.115?top=1

Please use GitHub Issues to bring up any errors that occur with software rather than emailing authors.

Note on Versions:

• version 0 represents code used for biorxiv manuscript
• version 0.2.1 was used for Genome Research manuscript (See Supplemental Information as well)

Documentation can be found at http://nucleoatac.readthedocs.org/en/latest/

If you want to easily read in NucleoATAC outputs into R for further processing or exploration, check out NucleoATACR