Visualization tool for COVID19 outbreak in India using GeoPandas and Bokeh

For Jupyter/JupyterHub/JupyterLab in AMD64/x86-64 Linux machines

• Run the notebook by selecting from the menu: Kernel and then: Restart & Run All

For Jupyter in AARCH64 Linux machines

• Deploy Bokeh server for AARCH64 Linux using the cheatsheet below
• Edit the first cell to: setup=False
• Run the notebook

For Jupyter in Windows machines

• Deploy Bokeh server using the cheatsheet below
• Activate conda virtualenv: conda activate GeoPandas
• Install Jupyter and ipykernel: conda install -c conda-forge python=3 notebook ipykernel --yes
• Run Jupyter: jupyter notebook
• Edit the first cell to: setup=False
• Run the notebook

For Google Colab

• Launch using the Google Colab link, go to: Runtime, select: Run all or press CTRL+F9
• Accept the Google Colab warning about notebook not authored by Google by clicking: Run anyway

• Git clone the repositroy: git clone https://github.com/MoadComputer/covid19-visualization; cd covid19-visualization
• Launch the Bokeh server: bokeh serve --show ./app/COVID19_India.py
• Go to your browser location and the app will be served

For AMD64/x86-64 Linux users

• Install git: apt install git
• Clone the repo: git clone git clone https://github.com/MoadComputer/covid19-visualization; cd covid19-visualization
• Use the requirements file to install dependencies: python3 -m pip install -r ./requirements.txt

For AARCH64 Linux users

• Install build tools and CMake: apt install make clang llvm libc++-dev libc++abi-dev
• Install llmvmlite for python3: python3 -m pip install llvmlite
• Install libatlas-dev: apt install libatlas-base-dev
• Install AARCH64 linux dependencies: apt install libgdal-dev gdal-bin python3-gdal libtiff-dev libsqlite3-dev sqlite
• Clone and prepare PROJ repository for CMake: git clone https://github.com/OSGeo/PROJ; cd ./PROJ; ./autogen
• Configure PROJ: ./configure
• Make and install PROJ: make; make install
• Install pyproj: python3 -m pip install git+https://github.com/pyproj4/pyproj.git
• Install pandas: apt install python3-pandas
• Install app dependencies: python3 -m pip install fiona geopandas shapely bokeh --no-deps
• Install visvalingamwyatt for GeoJSON minification: python3 -m pip install visvalingamwyatt

For Windows users (Using Anaconda Python3)

• Update conda: conda update -n base -c defaults conda
• Create virtual Anaconda3 environment: conda create -n GeoPandas -c conda-forge python=3.11.5 geopandas --yes
• Activate virtual Anaconda3 environment: conda env activate GeoPandas
• Install git: conda install -n GeoPandas -c anaconda git
• Install bokeh: conda install -n GeoPandas -c bokeh bokeh
• Install matplolib: conda install -n GeoPandas -c conda-forge matplotlib descartes
• Install nbformat: conda install -n GeoPandas -c anaconda nbformat
• Update nbformat: conda update nbformat
• Install jupyter: conda install jupyter
• Update jupyter: conda update jupyter
• Install visvalingamwyatt for GeoJSON minification: python -m pip install visvalingamwyatt
• Launch jupyter: python -m notebook
• To remove the application: deactivate the virtual environment conda deactivate GeoPandas and run conda env remove --name GeoPandas