cmsrel CMSSW_10_2_0_pre6
cd CMSSW_10_2_0_pre6/src
cmsenv
git cms-init
git cms-merge-topic ozamram:dead_pixel_testing
git clone https://github.com/cms-analysis/DPGAnalysis-SiPixelTools.git
cd DPGAnalysis-SiPixelTools/
#get rid of directories with build errors that aren't needed
rm -rf PixelDBTools 
rm -rf PixelTriplets
scram b -j 20
cd DPGAnalysis-SiPixelTools/PixelTrees
git clone https://github.com/OzAmram/PixelTree-ProductionTool.git
cd PixelTree-ProductionTool
#run local jobs and redirect output to a log file, use GT realistic_v7 to avoid other sources of deadpixels
cmsRun local_job.py > myLog.txt
g++ -o testRun parse_log_and_pixeltree.C `root-config --cflags --glibs`
./testRun PixelTree_deadpixel_test.root myLog.txt test_out.root