cytostream

Information and documentation can be found on the project homepage:
http://code.google.com/p/cytostream/


INSTALL

    Source
    Refer to the wiki -- tag 'installation'
    http://code.google.com/p/cytostream/w/list

    Installables
    http://code.google.com/p/cytostream/downloads/list
    If you are using an installable then the information contained herein is not relevant

PREREQUISITES

For cytostream
    Python     - www.python.org
    Qt SDK     - http://qt.nokia.com
    PyQt4      - http://www.riverbankcomputing.co.uk/software/pyqt/intr0
    PIL        - http://www.pythonware.com/products/pil
    fcm        - http://code.google.com/p/py-fcm

For fcm
    Numpy      - http://numpy.scipy.org
    SciPy      - http://www.scipy.org
    Matplotlib - http://matplotlib.sourceforge.net

MECURIAL

A good start for the .hginore file would be somthing like

*****************************
./*/projects/*
.*\.pyc
.*~
config_cs.py
./.hg/hgrc
dist/*
build/*
fcm.log

*****************************

hgrc file

*****************************
[paths]
default = https://adamricha@code.google.com/p/cytostream/

[ui]
username = <username>@gmail.com

PYTHONPATH

If you would like to specify your python path

    ~$ cd cytostream
    ~$ mv config_cs.py config_cs.py

Then edit the file and change the following variable to something like
    
    CONFIGCS = {'python_path':'/usr/local/bin/python'}

****************************

GPU cards

****************************

to check the number of and type of GPU cards installed on your system

  ~$ lspci | grep VGA

then edit the key value for 'number_gpus' in CONFIGCS (config_cs.py)