GitHub - bendmorris/waxwing-phylogeography: Phylogeography of cedar and bohemian waxwings, and comparison to silky flycatchers. From a class project.

Sequence data from genbank.

Requirements: raxml, muscle, BioPython

To run all analyses:

make

Results will be saved as PNG images in the working directory.

Name		Name	Last commit message	Last commit date
Latest commit History 26 Commits
.gitignore		.gitignore
Makefile		Makefile
README.md		README.md
bombycilla_co1.fasta		bombycilla_co1.fasta
bombycilla_cytb.fasta		bombycilla_cytb.fasta
bombycillidae_cytb.fasta		bombycillidae_cytb.fasta
draw_tree.py		draw_tree.py
fastaNamer.pl		fastaNamer.pl
fill_sample_locations.py		fill_sample_locations.py
get_location.py		get_location.py
hylocitrea_cytb.fasta		hylocitrea_cytb.fasta
museum_map.py		museum_map.py
museum_samples.csv		museum_samples.csv
phainopepla_co1.fasta		phainopepla_co1.fasta
phainopepla_cytb.fasta		phainopepla_cytb.fasta
phainoptila_co1.fasta		phainoptila_co1.fasta
phainoptila_cytb.fasta		phainoptila_cytb.fasta
ptilogonys_cytb.fasta		ptilogonys_cytb.fasta
sample_locations		sample_locations
sample_map.py		sample_map.py

bendmorris/waxwing-phylogeography