GitHub - benedictpaten/cactusTools: A home for various common but non-essential scripts for the cactus project

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 60 Commits
beds		beds
bin		bin
genemap		genemap
graphVizPlots		graphVizPlots
lib		lib
mafs		mafs
psls		psls
shared		shared
stats		stats
transmap		transmap
traversal		traversal
tuning		tuning
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
Makefile		Makefile
README		README
__init__.py		__init__.py
allTests.py		allTests.py
cactusUtils.c		cactusUtils.c
cactusUtils.h		cactusUtils.h
include.mk		include.mk

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Tools for the Cactus genome alignment program. 

Developed by Benedict Paten and Ngan Nguyen at UCSC.

Installation instructions:

(1) Install Cactus

(2) Add the directory containing cactusTools to your python path.

(3) Edit the include.mk file to point to the location of cactus and type 'make all'

(4) Put the bin directory on your path.

(5) Type 'make test' to test the tools suite