$ git clone https://github.com/bfortuner/vaa3d-api.git
$ cd vaa3d-api

$ sudo easy_install pip
$ sudo pip install virtualenv
$ virtualenv venv
$ . venv/bin/activate

$ pip install -r requirements.txt
$ pip install awsebcli
$ pip install --upgrade google-api-python-client

export VAA3D_AWS_ACCESS_KEY='accesskey'		
export VAA3D_AWS_SECRET_KEY='secretkey'
export VAA3D_USER_AWS_ACCESS_KEY='accesskey'		
export VAA3D_USER_AWS_SECRET_KEY='secretkey'
export VAA3D_CONFIG='TestConfig'
export VAA3D_DB_PASSWORD='yourdbkey'
export VAA3D_PATH='yourpathtoVaa3d'
export TASK_RUNNER_PATH='xvfb-run python task_runner.py' #remove xvfb-run for local testing

$ python application.py

$ python run_job_with_s3.py

$ deactivate

$ eb init
$ eb create
$ eb start
$ eb stop

$ eb deploy

cd;
wget http://home.penglab.com/proj/vaa3d/v3100/Vaa3D_CentOS_64bit_v3.100.tar.gz
gunzip Vaa3D_CentOS_64bit_v3.100.tar.gz
tar -xvf Vaa3D_CentOS_64bit_v3.100.tar

sudo yum -y install emacs
sudo yum -y install git
sudo yum -y install freeglut
sudo yum -y install mesa-libGL-devel mesa-libGLU-devel
sudo yum -y install gcc gcc-c++
sudo yum -y install libpng12.x86_64 libXrender-devel.x86_64
sudo yum -y install xorg-x11-server-Xvfb

export VAA3D_AWS_ACCESS_KEY='accesskey'		
export VAA3D_AWS_SECRET_KEY='secretkey'
export VAA3D_USER_AWS_ACCESS_KEY='accesskey'		
export VAA3D_USER_AWS_SECRET_KEY='secretkey'
export VAA3D_DB_PASSWORD='your-db-password'
export VAA3D_PATH='/home/ec2-user/Vaa3D_CentOS_64bit_v3.100/start_vaa3d.sh'
export TASK_RUNNER_PATH='xvfb-run python task_runner.py'

export DISPLAY=":98"

alias vaa3d='/home/ec2-user/Vaa3D_CentOS_64bit_v3.100/start_vaa3d.sh'

aws s3 cp s3://vaa3d-test-data/smalltestdir.zip .
unzip smalltestdir.zip

vaa3d -x vn2 -f app2 -i ~/testfilesdir/smalltest.v3dpbd

git clone https://github.com/bfortuner/vaa3d-api
cd vaa3d-api
sudo pip install -r requirements.txt
---
pip freeze > requirements.txt (to add new reqs)

source ~/.bash_profile
cd ~/vaa3d-api
circusd --daemon circus.ini

ps aux | grep task_runner
circus-top
circusctl
localhost:8080
circusctl quit

pgrep -f task_runner
pkill -f task_runner

python -m pytest tests/ (all tests)
python -m pytest -k filenamekeyword (specific tests)
python -m pytest tests/utils/test_sample.py (single test file)
python -m pytest tests/utils/test_sample.py::test_answer_correct (single test method)
python -m pytest --resultlog=testlog.log tests/ (send test output to file)
python -m pytest -s tests/ (print output to console)

docker-machine ls
docker-machine env default
docker-machine restart default (if connection gets stale and you see network errors building image)
eval "$(docker-machine env default)" (set docker env variables in terminal)
docker tag image_id 647215175976.dkr.ecr.us-east-1.amazonaws.com/vaa3d-test:latest
docker pull/push 647215175976.dkr.ecr.us-east-1.amazonaws.com/vaa3d:latest
cp dockerfiles/Dockerfile .
Update Dockerfile w TestConfig
docker build /path/to/Dockerfile/directory (or just . in in same directory)
docker build --no-cache -t dev . (build with tag "dev")
docker images
docker run -d 647215175976.dkr.ecr.us-east-1.amazonaws.com/vaa3d:latest
docker run -d -e VAA3D_CONFIG='TestConfig' dev xvfb-run python task_runner.py job_items
docker ps
docker exec -t -i container_id bash
show envvariables (printenv)
docker rm -v $(docker ps -a -q) (remove all containers and volumes)
docker rmi $(docker images -q)
docker cp foo.txt mycontainer:/foo.txt
docker cp mycontainer:/foo.txt foo.txt

#http://docs.aws.amazon.com/AmazonECS/latest/developerguide/launch_container_instance.html
type amazon-ecs-optimized in the Search community AMIs
#!/bin/bash
echo ECS_CLUSTER=your_cluster_name >> /etc/ecs/ecs.config

#http://docs.aws.amazon.com/AmazonECR/latest/userguide/ECR_AWSCLI.html#AWSCLI_get-login
aws ecr get-login --region us-east-1
docker tag image_id 647215175976.dkr.ecr.us-east-1.amazonaws.com/vaa3d-test:latest
docker pull/push 647215175976.dkr.ecr.us-east-1.amazonaws.com/vaa3d-test:latest

export DISPLAY=":98"
Xvfb $DISPLAY >& Xvfb.log &
trap "kill $! || true" EXIT