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GSRT_batch.py
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GSRT_batch.py
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# -*- coding: utf-8 -*-
"""
Created on Sun Jan 31 02:06:13 2016
@author: irnakat
"""
bigmachine = True
# batch test transfer function
import datetime
import sys
import platform as pf
import time
import numpy as np
globalstart = time.clock()
fname = 'log_'+str(datetime.datetime.now().date())+'_'+str(datetime.datetime.now().time())+'.txt'
#fname = 'logtest.txt'
def get_processor_info():
import platform, subprocess
if platform.system() == "Windows":
return platform.processor()
elif platform.system() == "Darwin":
return subprocess.check_output(['/usr/sbin/sysctl', "-n", "machdep.cpu.brand_string"]).strip()
elif platform.system() == "Linux":
command = "cat /proc/cpuinfo"
return subprocess.check_output(command, shell=True).strip()
return ""
if bigmachine:
# for big machine
ntest = 5
# inputfileid = [0,1,2,3,4,5,8,9]
inputfileid = [0,2,3,5,8,9]
inputfileidpsv = [6,7]
inputfileidlayers = [0,2]
inputfileidlayerspsv = [6]
# nlayer = np.logspace(0,3,16)
nlayer = np.logspace(0,3,16)
else:
# for small machine
ntest = 1
inputfileid = [0]
inputfileidpsv = [7]
inputfileidlayers = [0]
inputfileidlayerspsv = [6]
nlayer = np.logspace(0,2,11)
clf_error = 'sys.exit("Calculation is aborted! Check log file on "+fname+" !")'
with open(fname,'w+') as f:
# 000 - write basic info on log
print('000 - basic info')
f.write('000 - basic info\n')
f.write('time \t : '+str(datetime.datetime.now())+'\n')
f.write('num test\t : '+str(ntest)+'\n')
f.write('platform\t : '+sys.platform+'\n')
f.write('processor\t : '+str(pf.processor())+'\n')
try:
t = get_processor_info()
f.write('more proc\t : '+t[t.find('model name : ')+13:t.find('stepping')-1]+'\n')
except:
print 'more proc failed! move on.'
f.write('Py build\t : '+str(pf.python_build())+'\n')
f.write('PyCompiler\t : '+str(pf.python_compiler())+'\n')
f.write('Comp name\t : '+str(pf.uname()[1])+'\n')
f.write('Kernel\t : '+str(pf.uname()[2])+'\n')
f.write('OS Version\t : '+str(pf.uname()[3])+'\n\n')
print(' --> OK')
# 001 - check python modules
print('001 - modules test')
modulesList = ['numpy','copy','scipy','commondata','IOfile','GSRTtools',
'TFCalculator','TSCalculator','requests',
'os']
try:
for mid in modulesList:
exec('import '+mid)
f.write('001 - modules test\nModules test are complete!\n')
except ImportError:
f.write('001 - modules test\nModules "'+mid+'" is not exist!\nCalculation is aborted!\n')
#raise("Calculation is aborted! Check log file on "+fname+" !")
eval(clf_error)
f.write('\n')
print(' --> OK')
#002 - Check Input File
print('002 - input files')
f.write('002 - input files\n')
inputlist = ['sampleinput_linear_elastic_1layer_halfspace.dat',
'sampleinput_linear_elastic_6layer_halfspace.dat',
'sampleinput_linear_elastic_6layer_halfspace_400vs30.dat',
'sampleinput_linear_eq_elastic_1layer_halfspace.dat',
'sampleinput_linear_eq_elastic_6layer_halfspace.dat',
'sampleinput_linear_eq_elastic_6layer_halfspace_400vs30.dat',
'sampleinput_psv_s_linear_elastic_1layer_halfspace.dat',
'sampleinput_psv_s_linear_elastic_6layer_halfspace.dat',
'ferndale2_parameter.dat',
'ferndale2_parameter_lineq.dat']
for iid in inputlist:
if not os.path.isfile(iid):
f.write('Input file --> "'+iid+'" is not exist!')
eval(clf_error)
f.write('Input files are complete!\n')
#Import modules
from TFCalculator import TFCalculator as TFC
from TSCalculator import TSCalculator as TSC
f.write('\n')
print(' --> OK')
#003 - Kramer Transfer Function
print('003 - kramer TF')
f.write('003 - kramer TF\n')
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileid:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
theclass = TFC(data)
start = time.clock()
theclass.tf_kramer286_sh()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#004 - Knopoff SH simple Transfer Function
print('004 - knopoff SH simple TF')
f.write('004 - knopoff SH simple TF\n')
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileid:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
theclass = TFC(data)
start = time.clock()
theclass.tf_knopoff_sh()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#005 - Knopoff SH advance Transfer Function
print('005 - knopoff SH advance TF')
f.write('005 - knopoff SH advance TF\n')
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileid:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
theclass = TFC(data)
start = time.clock()
theclass.tf_knopoff_sh_adv()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#006 - Kennet SH Transfer Function
print('006 - Kennet SH TF')
f.write('006 - Kennet SH TF\n')
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileid:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
theclass = TFC(data)
start = time.clock()
theclass.tf_kennet_sh()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#007 - Knopoff PSV Transfer Function
print('007 - Knopoff PSV TF')
f.write('007 - Knopoff PSV TF\n')
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileidpsv:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
theclass = TFC(data)
start = time.clock()
theclass.tf_knopoff_psv_adv()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#008 - Kramer SH Time Series - dirac.dat
print('008 - Kramer SH TS')
f.write('008 - Kramer SH TS\n')
f.write('fID\tn-iter\telapsed\tstdev\n')
method = 'kramer286_sh'
for iid in inputfileid:
elapsedTS = []
for i in range(ntest):
start = time.clock()
tsclass = TSC(inputlist[iid],method=method)
elapsedTS.append(time.clock()-start)
f.write('%d\t%d\t%.2e\t%.2e\n'%(iid,tsclass.lastiter,np.mean(elapsedTS),np.std(elapsedTS)))
f.write('\n')
print(' --> OK')
#009 - Knopoff SH Simple Time Series - dirac.dat
print('009 - Knopoff SH Simple TS')
f.write('009 - Knopoff SH Simple TS\n')
f.write('fID\tn-iter\telapsed\tstdev\n')
method = 'knopoff_sh'
for iid in inputfileid:
elapsedTS = []
for i in range(ntest):
start = time.clock()
tsclass = TSC(inputlist[iid],method=method)
elapsedTS.append(time.clock()-start)
f.write('%d\t%d\t%.2e\t%.2e\n'%(iid,tsclass.lastiter,np.mean(elapsedTS),np.std(elapsedTS)))
f.write('\n')
print(' --> OK')
#010 - Knopoff SH advance Time Series - dirac.dat
print('010 - Knopoff SH advance TS')
f.write('010 - Knopoff SH advance TS\n')
f.write('fID\tn-iter\telapsed\tstdev\n')
method = 'knopoff_sh_adv'
for iid in inputfileid:
elapsedTS = []
for i in range(ntest):
start = time.clock()
tsclass = TSC(inputlist[iid],method=method)
elapsedTS.append(time.clock()-start)
f.write('%d\t%d\t%.2e\t%.2e\n'%(iid,tsclass.lastiter,np.mean(elapsedTS),np.std(elapsedTS)))
f.write('\n')
print(' --> OK')
#011 - Kennet SH Time Series - dirac.dat
print('011 - Kennet SH TS')
f.write('011 - Kennet SH TS\n')
f.write('fID\tn-iter\telapsed\tstdev\n')
method = 'kennet_sh'
for iid in inputfileid:
elapsedTS = []
for i in range(ntest):
start = time.clock()
tsclass = TSC(inputlist[iid],method=method)
elapsedTS.append(time.clock()-start)
f.write('%d\t%d\t%.2e\t%.2e\n'%(iid,tsclass.lastiter,np.mean(elapsedTS),np.std(elapsedTS)))
f.write('\n')
print(' --> OK')
#012 - Knopoff PSV Time Series - dirac.dat
print('012 - Knopoff PSV TS')
f.write('012 - Knopoff PSV TS\n')
f.write('fID\tn-iter\telapsed\tstdev\n')
method = 'knopoff_psv_adv'
for iid in inputfileidpsv:
elapsedTS = []
for i in range(ntest):
start = time.clock()
tsclass = TSC(inputlist[iid],method=method)
elapsedTS.append(time.clock()-start)
f.write('%d\t%d\t%.2e\t%.2e\n'%(iid,tsclass.lastiter,np.mean(elapsedTS),np.std(elapsedTS)))
f.write('\n')
print(' --> OK')
# extreme case test increase number of layer
nlayer = [int(i) for i in nlayer]
idanalysis = 12
for nl in nlayer:
#003 - Kramer Transfer Function
idanalysis+=1
print('%03d - Kramer SH %d layers'%(idanalysis,nl))
f.write('%03d - Kramer SH %d layers\n'%(idanalysis,nl))
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileidlayers:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
data['sourceloc']=nl
data['nlayer']=nl+1
data['tfPair'][0][1]=nl
newhl = []; newvs = []; newdn = []; newqs = []; newvp = []; newqp = []
newsoiltype = []
for j in range(nl):
newhl.append(data['hl'][0]/nl)
newvs.append(data['vs'][0])
newqs.append(data['qs'][0])
newdn.append(data['dn'][0])
newhl.append(data['hl'][-1])
newvs.append(data['vs'][-1])
newqs.append(data['qs'][-1])
newdn.append(data['dn'][-1])
data['hl']=newhl
data['vs']=newvs
data['qs']=newqs
data['dn']=newdn
try:
for j in range(nl):
newvp.append(data['vp'])
newqp.append(data['qp'])
newvp.append(data['vp'][-1])
newqp.append(data['qp'][-1])
data['vp']=newvp
data['qp']=newqp
except:
pass
try:
for j in range(nl):
newsoiltype.append(data['soiltype'][0])
newsoiltype.append(data['soiltype'][-1])
data['soiltype']=newsoiltype
except:
pass
theclass = TFC(data)
start = time.clock()
theclass.tf_kramer286_sh()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#004 - Knopoff SH simple Transfer Function
idanalysis+=1
print('%03d - Knopoff SH Simple %d layers'%(idanalysis,nl))
f.write('%03d - Knopoff SH Simple %d layers\n'%(idanalysis,nl))
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileidlayers:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
data['sourceloc']=nl
data['nlayer']=nl+1
data['tfPair'][0][1]=nl
newhl = []; newvs = []; newdn = []; newqs = []; newvp = []; newqp = []
newsoiltype = []
for j in range(nl):
newhl.append(data['hl'][0]/nl)
newvs.append(data['vs'][0])
newqs.append(data['qs'][0])
newdn.append(data['dn'][0])
newhl.append(data['hl'][-1])
newvs.append(data['vs'][-1])
newqs.append(data['qs'][-1])
newdn.append(data['dn'][-1])
data['hl']=newhl
data['vs']=newvs
data['qs']=newqs
data['dn']=newdn
try:
for j in range(nl):
newvp.append(data['vp'])
newqp.append(data['qp'])
newvp.append(data['vp'][-1])
newqp.append(data['qp'][-1])
data['vp']=newvp
data['qp']=newqp
except:
pass
try:
for j in range(nl):
newsoiltype.append(data['soiltype'][0])
newsoiltype.append(data['soiltype'][-1])
data['soiltype']=newsoiltype
except:
pass
theclass = TFC(data)
start = time.clock()
theclass.tf_knopoff_sh()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#005 - Knopoff SH advance Transfer Function
idanalysis+=1
print('%03d - Knopoff SH advance %d layers'%(idanalysis,nl))
f.write('%03d - Knopoff SH advance %d layers\n'%(idanalysis,nl))
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileidlayers:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
data['sourceloc']=nl
data['nlayer']=nl+1
data['tfPair'][0][1]=nl
newhl = []; newvs = []; newdn = []; newqs = []; newvp = []; newqp = []
newsoiltype = []
for j in range(nl):
newhl.append(data['hl'][0]/nl)
newvs.append(data['vs'][0])
newqs.append(data['qs'][0])
newdn.append(data['dn'][0])
newhl.append(data['hl'][-1])
newvs.append(data['vs'][-1])
newqs.append(data['qs'][-1])
newdn.append(data['dn'][-1])
data['hl']=newhl
data['vs']=newvs
data['qs']=newqs
data['dn']=newdn
try:
for j in range(nl):
newvp.append(data['vp'])
newqp.append(data['qp'])
newvp.append(data['vp'][-1])
newqp.append(data['qp'][-1])
data['vp']=newvp
data['qp']=newqp
except:
pass
try:
for j in range(nl):
newsoiltype.append(data['soiltype'][0])
newsoiltype.append(data['soiltype'][-1])
data['soiltype']=newsoiltype
except:
pass
theclass = TFC(data)
start = time.clock()
theclass.tf_knopoff_sh_adv()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#006 - Kennet SH Transfer Function
idanalysis+=1
print('%03d - Kennet SH %d layers'%(idanalysis,nl))
f.write('%03d - Kennet SH %d layers\n'%(idanalysis,nl))
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileidlayers:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
data['sourceloc']=nl
data['nlayer']=nl+1
data['tfPair'][0][1]=nl
newhl = []; newvs = []; newdn = []; newqs = []; newvp = []; newqp = []
newsoiltype = []
for j in range(nl):
newhl.append(data['hl'][0]/nl)
newvs.append(data['vs'][0])
newqs.append(data['qs'][0])
newdn.append(data['dn'][0])
newhl.append(data['hl'][-1])
newvs.append(data['vs'][-1])
newqs.append(data['qs'][-1])
newdn.append(data['dn'][-1])
data['hl']=newhl
data['vs']=newvs
data['qs']=newqs
data['dn']=newdn
try:
for j in range(nl):
newvp.append(data['vp'])
newqp.append(data['qp'])
newvp.append(data['vp'][-1])
newqp.append(data['qp'][-1])
data['vp']=newvp
data['qp']=newqp
except:
pass
try:
for j in range(nl):
newsoiltype.append(data['soiltype'][0])
newsoiltype.append(data['soiltype'][-1])
data['soiltype']=newsoiltype
except:
pass
theclass = TFC(data)
start = time.clock()
theclass.tf_kennet_sh()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
#007 - Knopoff PSV Transfer Function
idanalysis+=1
print('%03d - Knopoff PSV %d layers'%(idanalysis,nl))
f.write('%03d - Knopoff PSV %d layers\n'%(idanalysis,nl))
f.write('fID\telapsedrd\tstdevrd\telapsed\tstdev\tsizetf\n')
for iid in inputfileidlayerspsv:
elapsedRead = []
elapsedTF = []
elapsedTFbytes = []
for i in range(ntest):
start = time.clock()
data = IOfile.parsing_input_file(inputlist[iid])
elapsedRead.append(time.clock()-start)
data['inputmotion']='dirac.dat'
data['sourceloc']=nl
data['nlayer']=nl+1
data['tfPair'][0][1]=nl
newhl = []; newvs = []; newdn = []; newqs = []; newvp = []; newqp = []
newsoiltype = []
for j in range(nl):
newhl.append(data['hl'][0]/nl)
newvs.append(data['vs'][0])
newqs.append(data['qs'][0])
newdn.append(data['dn'][0])
newhl.append(data['hl'][-1])
newvs.append(data['vs'][-1])
newqs.append(data['qs'][-1])
newdn.append(data['dn'][-1])
data['hl']=newhl
data['vs']=newvs
data['qs']=newqs
data['dn']=newdn
try:
for j in range(nl):
newvp.append(data['vp'][0])
newqp.append(data['qp'][0])
newvp.append(data['vp'][-1])
newqp.append(data['qp'][-1])
data['vp']=newvp
data['qp']=newqp
except:
pass
try:
for j in range(nl):
newsoiltype.append(data['soiltype'][0])
newsoiltype.append(data['soiltype'][-1])
data['soiltype']=newsoiltype
except:
pass
theclass = TFC(data)
start = time.clock()
theclass.tf_knopoff_psv_adv()
elapsedTF.append(time.clock()-start)
elapsedTFbytes.append(numpy.array(theclass.tf).nbytes)
f.write('%d\t%.2e\t%.2e\t%.2e\t%.2e\t%d\t\n'%(iid,np.mean(elapsedRead),np.std(elapsedRead),
np.mean(elapsedTF),np.std(elapsedTF),np.max(elapsedTFbytes)))
f.write('\n')
print(' --> OK')
globalelapsed = (time.clock()-globalstart)
f.write('Total Elapsed Time : %.4f'%globalelapsed)
print('Total elapsed time : %.4f'%globalelapsed)
#print ('\nreading log file\n')
#with open(fname,'r') as f:
# print f.read()