protein-viewer

Using matplotlib and Panda3D for viewing proteins through their PDB archives.

This project has as an objective using different libraries for viewing 3D protein models.

The libraries are:

· Mathematical library, matplotlib

· Videogame engine library, Panda3D

MATPLOTLIB

Execute the command python matviewer.py data/1yd9.pdb "mode"

4 possible modes: cpk, aminoacid, backbone and dssp

PANDA3D

Execute the command python pandaviewer.py data/1yd9.pdb for the example

Commands are:

1: CPK

2: Aminoacid type

3: Backbone

4: DSSP

c: chain cloud

Left arrow key: Horizontal rotation

Up arrow key: Vertical rotation

Down arrow key: Stop rotation

(Camera is a bit wonky)

Left click for panning

Middle click for rotation 1

Right click for zooming

Middle + Right click for rotation 2

Escape: Exit

Name		Name	Last commit message	Last commit date
Latest commit History 49 Commits
Viewer2d		Viewer2d
Viewer3d		Viewer3d
data		data
POO_matplot.ipynb		POO_matplot.ipynb
README.md		README.md
SpheresVisual-Copy1.ipynb		SpheresVisual-Copy1.ipynb
SpheresVisual.ipynb		SpheresVisual.ipynb
VisPy.ipynb		VisPy.ipynb
markers.py		markers.py
markers2.py		markers2.py
matviewer.py		matviewer.py
molecular_data.py		molecular_data.py
spherestest.py		spherestest.py
spherestest2.py		spherestest2.py
spheresvisual2.ipynb		spheresvisual2.ipynb
vispytest.py		vispytest.py
vispytest2.py		vispytest2.py
visualtest.py		visualtest.py

campagnola/protein-viewer