This project is about tracking mice during burrowing activities. It analyzes the dynamics of the mouse, the ground line, and the actual burrows.
Necessary python packages:
| Package | Usage |
|---|---|
| cv2 | OpenCV python bindings for computer vision |
| h5py | HDF5 python binding for writing out data |
| matplotlib | Plotting library used for output |
| networkx | Graph library for graph based tracking |
| numpy | Array library used for manipulating data |
| scipy | Miscellaneous scientific functions |
| shapely | Library for manipulating geometric shapes |
| yaml | YAML binding for writing out data |
Optional python packages that can be installed via pip:
| Package | Usage |
|---|---|
| dateutil | Being less picky about date formats |
| descartes | Debug plotting of shapes |
| faulthandler | Detecting low level crashes |
| grip | Converting markdown to html |
| json | For reading the output of ffprobe |
| pandas | Writing results to csv files |
| pint | Reporting results with physical units |
| sharedmem | Showing the videos in a separate process while iterating |
| thinning | package for thinning binary images |
| tqdm | Showing a progress bar while iterating |
Copyright (c) 2014 Zulko
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.