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0_report_aquifer_properies.py
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0_report_aquifer_properies.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Edwin Husni Sutanudjaja (EHS, 29 Sep 2014): This script for reporting aquifer properties
# at 5 arc-min and 30 arc-min resolution.
import os
import sys
import numpy as np
from pcraster.framework import *
import pcraster as pcr
import outputNetCDF
import virtualOS as vos
from monte_carlo_thickness import MonteCarloAquiferThickness
import margat_correction
import logging
logger = logging.getLogger("main_script") # get name for the logger
from logger import Logger
# output directory:
output_directory = "/scratch/edwin/aquifer_properties/"
output_05min_filename = "/scratch/edwin/aquifer_properties/groundwater_properties_05min.nc"
output_30min_filename = "/scratch/edwin/aquifer_properties/groundwater_properties_30min.nc"
cleanOutputDir = True
# netcdf attributes:
netcdf_attributes = {}
netcdf_attributes['institution'] = "Utrecht University, Dept. of Physical Geography"
netcdf_attributes['title' ] = "Groundwater properties"
netcdf_attributes['source' ] = "None"
netcdf_attributes['history' ] = "version 29 September 2014"
netcdf_attributes['references' ] = "None"
netcdf_attributes['description'] = "None"
netcdf_attributes['comment' ] = "Processed and calculated by Edwin H. Sutanudjaja (e-mail: E.H.Sutanudjaja@uu.nl"
# clone/landmask maps at 05 arc min and 30 arc min resolution
clone_map_05min_file = "/scratch/edwin/processing_whymap/version_19september2014/water_polygon/water-polygons-split-4326/landmask_05min.map"
clone_map_30min_file = "/data/hydroworld/PCRGLOBWB20/input30min/routing/lddsound_30min.map"
# input file: thickness properties at 30arc min resolution
thickness_05min_netcdf = {}
thickness_05min_netcdf['filename'] = "/scratch/edwin/aquifer_thickness_5arcmin_world_final/sedimentary_basin_05_arcmin.nc"
thickness_05min_netcdf['var_name'] = "average_corrected"
# input file: aquifer properties at 30arc min resolution
aquifer_properties_05min_netcdf = {}
aquifer_properties_05min_netcdf['filename'] = "/data/hydroworld/PCRGLOBWB20/input5min/groundwater/groundwaterProperties5ArcMin.nc"
# input file: aquifer properties at 30arc min resolution
aquifer_properties_30min_netcdf = {}
aquifer_properties_30min_netcdf['filename'] = "/data/hydroworld/PCRGLOBWB20/input30min/groundwater/groundwaterProperties.nc"
def main():
# make output directory
try:
os.makedirs(output_directory)
except:
if cleanOutputDir == True: os.system('rm -r '+output_directory+"/*")
# change the current directory/path to output directory
os.chdir(output_directory)
# make temporary directory
tmp_directory = output_directory+"/tmp"
os.makedirs(tmp_directory)
vos.clean_tmp_dir(tmp_directory)
# format and initialize logger
logger_initialize = Logger(output_directory)
logger.info('Start processing for 5 arc-min resolution!')
# clone and landmask for 5 arc-min resolution
pcr.setclone(clone_map_05min_file)
landmask = pcr.defined(clone_map_05min_file)
# read thickness value (at 5 arc min resolution)
logger.info('Reading the thickness at 5 arc-min resolution!')
thickness = pcr.ifthen(landmask,\
vos.netcdf2PCRobjCloneWithoutTime(thickness_05min_netcdf['filename'], "average_corrected", clone_map_05min_file))
#
# update landmask
landmask = pcr.defined(thickness)
# read aquifer properties at 5 arc min resolution
logger.info('Reading saturated conductivity and specific yield at 5 arc-min resolution!')
saturated_conductivity = pcr.ifthen(landmask,\
vos.netcdf2PCRobjCloneWithoutTime(\
aquifer_properties_05min_netcdf['filename'],\
"kSatAquifer" , clone_map_05min_file))
specific_yield = pcr.ifthen(landmask,\
vos.netcdf2PCRobjCloneWithoutTime(\
aquifer_properties_05min_netcdf['filename'],\
"specificYield", clone_map_05min_file))
# saving 5 min parameters to a netcdf file
logger.info('Saving groundwater parameter parameters to a netcdf file: '+output_05min_filename)
#
output_05min_netcdf = outputNetCDF.OutputNetCDF(clone_map_05min_file)
#
variable_names = ["saturated_conductivity","specific_yield","thickness"]
units = ["m/day","1","m"]
variable_fields = [
pcr.pcr2numpy(saturated_conductivity, vos.MV),
pcr.pcr2numpy(specific_yield , vos.MV),
pcr.pcr2numpy(thickness , vos.MV),
]
pcr.report(saturated_conductivity, "saturated_conductivity_05min.map")
pcr.report(specific_yield , "specific_yield_05min.map")
pcr.report(thickness , "thickness_05min.map")
output_05min_netcdf.createNetCDF( output_05min_filename,variable_names,units)
output_05min_netcdf.changeAtrribute(output_05min_filename,netcdf_attributes)
output_05min_netcdf.data2NetCDF( output_05min_filename,variable_names,variable_fields)
logger.info('Start processing for 30 arc-min resolution!')
# upscaling thickness to 30 arc min resolution
logger.info('Upscaling thickness from 5 arc-min resolution to 30 arc-min!')
thickness_05min_array = pcr.pcr2numpy(thickness, vos.MV)
thickness_30min_array = vos.regridToCoarse(thickness_05min_array, 30./5.,"average")
#
# set clone for 30 arc min resolution
pcr.setclone(clone_map_30min_file)
#
landmask = pcr.defined(clone_map_30min_file)
thickness = pcr.ifthen(landmask,
pcr.numpy2pcr(pcr.Scalar, thickness_30min_array, vos.MV))
#
# update landmask
landmask = pcr.defined(thickness)
# read aquifer properties at 30 arc min resolution
logger.info('Reading saturated conductivity and specific yield at 30 arc-min resolution!')
saturated_conductivity = pcr.ifthen(landmask,\
vos.netcdf2PCRobjCloneWithoutTime(\
aquifer_properties_30min_netcdf['filename'],\
"kSatAquifer" , clone_map_30min_file))
specific_yield = pcr.ifthen(landmask,\
vos.netcdf2PCRobjCloneWithoutTime(\
aquifer_properties_30min_netcdf['filename'],\
"specificYield", clone_map_30min_file))
# saving 30 min parameters to a netcdf file
logger.info('Saving groundwater parameter parameters to a netcdf file: '+output_30min_filename)
#
output_30min_netcdf = outputNetCDF.OutputNetCDF(clone_map_30min_file)
#
variable_names = ["saturated_conductivity","specific_yield","thickness"]
units = ["m/day","1","m"]
variable_fields = [
pcr.pcr2numpy(saturated_conductivity, vos.MV),
pcr.pcr2numpy(specific_yield , vos.MV),
pcr.pcr2numpy(thickness , vos.MV),
]
pcr.report(saturated_conductivity, "saturated_conductivity_30min.map")
pcr.report(specific_yield , "specific_yield_30min.map")
pcr.report(thickness , "thickness_30min.map")
output_30min_netcdf.createNetCDF( output_30min_filename,variable_names,units)
output_30min_netcdf.changeAtrribute(output_30min_filename,netcdf_attributes)
output_30min_netcdf.data2NetCDF( output_30min_filename,variable_names,variable_fields)
if __name__ == '__main__':
sys.exit(main())