Software for proofreading EM connectomics

git clone -b flyem_release https://github.com/janelia-flyem/NeuTu.git NeuTu

curl -X GET https://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh > Miniconda-latest-MacOSX-x86_64.sh
bash Miniconda-latest-MacOSX-x86_64.sh

#Assuming miniconda is installed under <CONDA_ROOT>
#Note: if the following command fails with some import error, you can unset PYTHONHOME and try again.
source <CONDA_ROOT>/bin/activate root
conda create -n <NAME> -c flyem neutu

#For future update, you can run 'conda update -n <NAME> -c flyem neutu' after activating miniconda.

Here <NAME> is the conda environment name. If you don't know what it is, just use neutu-env.

After successful installation, you should be able to lauch the application neutu.app in <CONDA_ROOT>/envs/<NAME>/bin.

curl -X GET https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh > Miniconda-latest-Linux-x86_64.sh
bash Miniconda-latest-Linux-x86_64.sh

#Assuming miniconda is installed under <CONDA_ROOT>
#Note: if the following command fails with some import error, you can unset PYTHONHOME and try again.
source <CONDA_ROOT>/bin/activate root
conda create -n <NAME> -c flyem neutu

#For future update, you can run 'conda update -n <NAME> -c flyem neutu' after activating miniconda.

Here <NAME> is the conda environment name. If you don't know what it is, just use neutu-env.

After successful installation, you can launch the program with the following commands

scource <CONDA_ROOT>/bin/activate <NAME>
neutu 

If the installation does not work for you, you can build the application from scratch.

Go to the NeuTu/neurolabi/shell directory and run

./setup_neutu_j <install_dir>

Here <install_dir> must be a clean directory if it already exists. Run <install_dir>/bin/neutu to launch the program after installation.

Note: you need to install the following packages using the package manager (e.g. apt-get for Ubuntu and yum/dnf for Fedora) if they have not been installed:

• libxext-dev
• freeglut3-dev
• build-essential for Ubuntu or groupinstall "Development Tools" for Fedora

Go to the NeuTu/neurolabi/shell directory and run

./setup_neutu_conda <install_dir>

Here <install_dir> must be a clean directory if it already exists. Run <install_dir>/bin/neutu to launch the program after installation.

Not supported yet.

https://www.dropbox.com/s/cnewjf7bdm3qbdj/manual.pdf?dl=0

Contact Ting Zhao: zhaot@janelia.hhmi.org for any questions or comments.