Tools related to metabolic modeling, reconstruction, data parsing and formatting, consistency checking, automatic gap filling, and model simulations.
See NEWS for information on recent changes. The master branch tracks the latest release while the develop branch is the latest version in development. Please apply any pull requests to the develop branch when creating the pull request.
Use pip to install (it is recommended to use a Virtualenv):
$ pip install psamm
The psamm-import tool is developed in a separate repository. After installing PSAMM the psamm-import tool can be installed using:
$ pip install git+https://github.com/zhanglab/psamm-import.git
The documentation for PSAMM is available at Read the Docs.
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
See LICENSE.