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graphStuff.py
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graphStuff.py
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import numpy as np
import cycle
# from collections import Counter
# import sys
import itertools
# Load the adjacency matrix
G = np.loadtxt("graphs/dodecahedron.txt", int)
def order(G):
return len(G)
def size(G):
return int(np.sum(G) / 2)
def degree(G,v):
return np.sum(G[v])
def maxDegree(G):
return np.amax(np.sum(G, axis=1))
def minDegree(G):
return np.amin(np.sum(G, axis=1))
def degreeSequence(G):
return sorted(np.sum(G, axis=1), reverse=True)
def openNeighborhood(G, v):
neighborhood = set()
for i in range(order(G)):
if G[v][i] == 1:
neighborhood.add(i)
neighborhood.add(v)
return neighborhood
def closedNeighborhood(G, v):
neighborhood = set()
for i in range(order(G)):
if G[v][i] == 1:
neighborhood.add(i)
# print (neighborhood)
return neighborhood
def isConnected(G):
totalNeighbors = openNeighborhood(G, 0)
for i in range(1,order(G)):
for j in totalNeighbors:
newNeighbors = openNeighborhood(G, j) - totalNeighbors
if len(newNeighbors) > 0:
break
totalNeighbors = totalNeighbors | newNeighbors
if len(totalNeighbors) == order(G):
break
return True if len(totalNeighbors) == order(G) else False
def powerset(iterable):
s = list(iterable)
return list(itertools.chain.from_iterable(itertools.combinations(s, r) for r in
range(len(s) + 1)))
def totalDomNumber(G):
for i in reversed(range(1,order(G)+1)):
notDominating = True
filtered = [x for x in powerset(set(range(order(G)))) if len(x) == i]
for j in range(len(filtered)):
if (isDom(filtered[j], G, 'closed')):
# print(filtered[j], isDom(filtered[j],G))
notDominating = False
# else:
# print(filtered[j], isDom(filtered[j],G))
# NOTES this is a bit weird... not sure if this if clause is reversed
# and I'm not sure if the i+1 is necessary.. its giving results
# that are too big
if (notDominating):
# print(filtered[j], isDom(filtered[j], G, 'closed'))
return i+1
return 1
def domNumber(G):
for i in reversed(range(1,order(G)+1)):
notDominating = True
filtered = [x for x in powerset(set(range(order(G)))) if len(x) == i]
for j in range(len(filtered)):
if (isDom(filtered[j], G)):
# print(filtered[j], isDom(filtered[j],G))
notDominating = False
# else:
# print(filtered[j], isDom(filtered[j],G))
if (notDominating):
# print(filtered[j], isDom(filtered[j],G))
return i+1
return 1
def isDom(S, G, neighbors = 'open'):
totalNeighbors = set()
for v in S:
if (neighbors == 'open'):
totalNeighbors = totalNeighbors | openNeighborhood(G,v)
else:
totalNeighbors = totalNeighbors | closedNeighborhood(G,v)
# if (len(totalNeighbors) == order(G)):
# print('neighbors of', S, totalNeighbors)
return (len(totalNeighbors) == order(G))
def indyNumber(G):
for i in reversed(range(1,order(G)+1)):
filtered = [x for x in powerset(set(range(order(G)))) if len(x) == i]
for j in range(len(filtered)):
independant = True
for n in filtered[j]:
for m in filtered[j]:
if G[n][m] == 1:
independant = False
if (independant):
# print(filtered[j])
return len(filtered[j])
# print(filtered[j], independant)
def cliqueNumber(G):
for i in reversed(range(1,order(G)+1)):
filtered = [x for x in powerset(set(range(order(G)))) if len(x) == i]
for j in range(len(filtered)):
clique = True
for n in filtered[j]:
for m in filtered[j]:
if G[n][m] != 1 and n != m:
clique = False
if (clique):
# print(filtered[j])
return len(filtered[j])
# print(filtered[j], clique)
def distance(G, v1, v2):
distance = 0
if v1 == v2:
return distance
visited = openNeighborhood(G, v1)
distance += 1
while v2 not in visited and distance < order(G):
for v in visited.copy():
visited = visited | closedNeighborhood(G, v)
distance += 1
if v2 in visited:
return distance
else:
return -1
# return 'not connected'
def eccentricity(G, v):
# print([distance(G, v, v2) for v2 in range(order(G)) if v != v2])
return np.amax([distance(G, v, v2) for v2 in range(order(G)) if v != v2])
def radius(G):
return np.amin([eccentricity(G, x) for x in range(order(G))])
def diameter(G):
return np.amax([eccentricity(G, x) for x in range(order(G))])
def girth(G):
return np.amax([cycle.find_cycle(G, x) for x in range(order(G))])
def residue(G):
dSeq = degreeSequence(G)
# print(dSeq)
maxD = dSeq[0]
while maxD > 0:
dSeq.remove(dSeq[0])
for i in range(maxD):
dSeq[i] -= 1
dSeq.sort(reverse = True)
# print(dSeq)
maxD = dSeq[0]
residue = len(dSeq)
return residue
def chromatic(G):
vertices = list(range(order(G)))
colorList = list(range(maxDegree(G) + 1))
coloring = [-1] * order(G)
# print(coloring)
# print(vertices)
# print(colorList)
for i in range(order(G)):
neighbors = closedNeighborhood(G, i)
neighborColors = set()
for j in neighbors:
neighborColors.add(coloring[j])
# print('neighbors of %d' % i, neighbors)
# print(coloring)
for c in colorList:
# print('neighbor colors of %d' % i, neighborColors)
if c not in neighborColors:
# print('\tassigning color {0} to vertex {1}'.format(c,i))
coloring[i] = c
break
coloring = [x for x in coloring if x != -1]
# Counter.keys() gives us unique colors used (no repeats)
# the len() method counts num of colors used
return len(set(coloring))
# return len(Counter(coloring).keys())
# NEW NOTES
# a graph with size 0 is the only graph with X(G) = 1
# a bipartite graph with at least one edge has X(G) = 2
# an odd-cycle has X(G) = 3
# if graph is complete, then maxDegree+1 colors are needed
# otherwise, chromatic number is at most maxDegree
# but it is greater than/equal to the clique number
# this means that at least we can restrict the range
# even if the algorithm itself is super slow
def complement(G):
complement = G.copy()
for i in range(order(G)):
for j in range(order(G)):
if G[i][j] == 0 and i != j:
complement[i][j] = 1
else:
complement[i][j] = 0
return complement
# Function Calls
#print("The adjacency matrix of G is: ")
#print(G)
#print('\n')
#print('order of G:', order(G))
#print('size:', size(G))
#print('max degree:', maxDegree(G))
#print('min degree:', minDegree(G))
#print('degree sequence:', degreeSequence(G))
#print('connected:', isConnected(G))
#S = {2, 4}
#print('2 and 4 dominate?', isDom(S,G))
#print('domination number:', domNumber(G))
#print('total domination number:', totalDomNumber(G))
#print('independance number:', indyNumber(G))
#print('clique number:', cliqueNumber(G))
#print('distance between 2 and 0:', distance(G, 2, 0))
#for i in range(len(G)):
print('eccentricity of v{0}: {1}'.format(2, eccentricity(G, 2)))
#print('radius of G:', radius(G))
#print('diameter of G:', diameter(G))
#print('residue of G:', residue(G))
#print('length of cycle for v1:', cycle(G, 1))
#print('girth of G:', girth(G))
#print('chromatic:', chromatic(G))
#print('complement:\n', complement(G))
#print('\n')
#for i in range(0,order(G)):
# print('degree of %s:' % i, degree(G,i))
# print('open neighborhood of %s:' % i, openNeighborhood(G,i))
#print('closed neighborhood of %s:' % i, closedNeighborhood(G,i))