Repository files navigation

proc-qiwei

Qiwei's analysis code

The thing is still... a mess. The actual thing to run is the dropout_analysis_cleaned.py file. It's in /Dropout_Interpolation_Analysis/xds.

Everything before line 195 are functions. Line 195-211 is an example of interpolation. Line 212-364 is the main loop. dropout() function call is on line 254, and the function itself is on line 87.

dropout_timepoints: timepoints for simulated dropouts. dropout_timepoints_length: how long is it for each dropout_timepoints. These two arrays are 1 to 1 correlated. spike_counts_dropout: the spike_counts array that has the points on dropout_timepoints cleared to 0.

Name		Name	Last commit message	Last commit date
Latest commit History 26 Commits
Dropout_Interpolation_Analysis		Dropout_Interpolation_Analysis
calibration		calibration
post_processing		post_processing
triangulation		triangulation
utils		utils
2D_DLC_likelihood_checking_script.py		2D_DLC_likelihood_checking_script.py
2D_DLC_likelihood_checking_script_OVERALL.py		2D_DLC_likelihood_checking_script_OVERALL.py
2D_DLC_tracking_err.py		2D_DLC_tracking_err.py
2D_DLC_tracking_err_SingleFileVersionBackup.py		2D_DLC_tracking_err_SingleFileVersionBackup.py
2D_DLC_videos_dropout_checking_script.py		2D_DLC_videos_dropout_checking_script.py
2D_Error_change_checking_script.py		2D_Error_change_checking_script.py
2D_Extract_Low_Likelihood_Frames.py		2D_Extract_Low_Likelihood_Frames.py
2D_Hand_speed_checking_script.py		2D_Hand_speed_checking_script.py
2D_Interpolation_Analysis_Stats_script.py		2D_Interpolation_Analysis_Stats_script.py
2D_Interpolation_Analysis_plot_script.py		2D_Interpolation_Analysis_plot_script.py
2D_Interpolation_Analysis_script.py		2D_Interpolation_Analysis_script.py
2D_Interpolation_Analysis_script_Handle.py		2D_Interpolation_Analysis_script_Handle.py
2D_Interpolation_Picture_Plotting.py		2D_Interpolation_Picture_Plotting.py
2D_Picture_Plotting.py		2D_Picture_Plotting.py
2D_Reprojection_Script.py		2D_Reprojection_Script.py
2D_Reprojection_Script_Correct.py		2D_Reprojection_Script_Correct.py
2D_Reprojection_Script_ForInterpolation.py		2D_Reprojection_Script_ForInterpolation.py
2D_Reprojection_Script_TEMP_OVER4DATASETS.py		2D_Reprojection_Script_TEMP_OVER4DATASETS.py
2D_Reprojection_Stats_Script.py		2D_Reprojection_Stats_Script.py
2D_Reprojection_Stats_Script_OVERALL.py		2D_Reprojection_Stats_Script_OVERALL.py
2D_Speed_plotting_script.py		2D_Speed_plotting_script.py
3D_excel converter script WITHOUT ARM1 OR ARM2.py		3D_excel converter script WITHOUT ARM1 OR ARM2.py
3D_hand_position_heatmap_script.py		3D_hand_position_heatmap_script.py
3D_hand_position_heatmap_script_backup.py		3D_hand_position_heatmap_script_backup.py
3D_hand_position_scatterplot_script.py		3D_hand_position_scatterplot_script.py
3D_handle_reconstruction_analysis_script-HARDCODE.py		3D_handle_reconstruction_analysis_script-HARDCODE.py
3D_handle_reconstruction_analysis_script.py		3D_handle_reconstruction_analysis_script.py
3D_handle_reconstruction_analysis_script1.py		3D_handle_reconstruction_analysis_script1.py
3D_marker_dropout_rate_checking_script.py		3D_marker_dropout_rate_checking_script.py
Crackle_kinematics.py		Crackle_kinematics.py
Crackle_kinematics_RT2DHandle.py		Crackle_kinematics_RT2DHandle.py
DLC_to_OpenSim_Converter.py		DLC_to_OpenSim_Converter.py
Manual_trial_separation_script.py		Manual_trial_separation_script.py
Neural_dataAnalysis_Matlab_Pickle_Datatype_Transform.py		Neural_dataAnalysis_Matlab_Pickle_Datatype_Transform.py
Neural_dataAnalysis_dataExtraction.py		Neural_dataAnalysis_dataExtraction.py
Neural_wiener_filter.py		Neural_wiener_filter.py
Plotting_position_difference_script.py		Plotting_position_difference_script.py
README.md		README.md
Read_pickle_files.py		Read_pickle_files.py
ReprojectionError-Crackle-2D.npy		ReprojectionError-Crackle-2D.npy
ReprojectionError-Crackle-3D.npy		ReprojectionError-Crackle-3D.npy
ReprojectionError-Han-2D.npy		ReprojectionError-Han-2D.npy
ReprojectionError-Han-3D.npy		ReprojectionError-Han-3D.npy
TEMP_labeled_markers_testing_script.py		TEMP_labeled_markers_testing_script.py
Untagged_trial_separation_script.py		Untagged_trial_separation_script.py
Video_change_fps.py		Video_change_fps.py
Video_cut_portion_out_script.py		Video_cut_portion_out_script.py
Video_experiment_phase_reconstruction_script.py		Video_experiment_phase_reconstruction_script.py
Video_extract_frames_script.py		Video_extract_frames_script.py
Videos_brightness_changing_script.py		Videos_brightness_changing_script.py
Xuan plotting example.py		Xuan plotting example.py
plot_Han_files.py		plot_Han_files.py
requirements.txt		requirements.txt

limblab/proc-qiwei

Folders and files

Latest commit

History

Repository files navigation

proc-qiwei

About

Resources

Stars

Watchers

Forks

Languages