Analysis scripts for galGal

• Makefile

  Driver script

• inputs/

  • chicken_transcripts

    RNASeq prepared by @likit

  • galGal3

    Gallus gallus reference genome, version 3. Publicly available at http://hgdownload.soe.ucsc.edu/goldenPath/galGal3/

  • galGal4

    Gallus gallus reference genome, version 4. Publicly available at http://hgdownload.soe.ucsc.edu/goldenPath/galGal4/

  • galGal5

    Gallus gallus reference genome, draft release of version 5. Not publicly available.

  • human
  • moleculo
  • uniprot

• outputs/

  Output files created by the Makefile or auxiliary scripts.

  Guideline: No output file should be generated based on files outside of inputs/ or workdirs/

• scripts/

  Auxiliary scripts.

• notebooks/

  IPython notebooks containing the analysis.

• workdirs/

  Job submission system outputs and results.

On MSU HPCC you can source hpcc.modules for all the dependencies.

BSD licensed. See the bundled LICENSE file for more details.