Report for SNP calls exported from JSI Sequence Pilot in TXT format.
Generates a PDF report with two tables, one comparing SNPs in the input samples to the reference, one comparing individual samples to each other, counting mismatches.
usage: report.py [-h] reference S [S ...] O
Compare a number of JSI Seq Pilot tables
positional arguments:
reference Reference SNPs, one per line: rs123456<tab>A
S One or more samples to compare
O Output prefix
optional arguments:
-h, --help show this help message and exit
- Python 2.6+
- Jinja 2