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pyradiomics-extension Version 1.0, which is developed based on the latest pyradiomics v1.2.

Advantages:

  1. pyradiomics-extension is allowed users input original DICOM files and RTstruture;
  2. computation of radiomics features on specific ROI in RTstruture;
  3. semi-automatic ROI name matching
  4. allow users to output radiomics features in different formats (e.g., RDF, csv, xml)

Usage:

  1. install pyradiomics
  2. Download pyradiomics-extension in the sub-directory of pyardiomics
  3. provide input parameters in "UserInputFile.txt" (see below input) and parameters of pyradiomics in "Params.yaml"
  4. execute MainScript.py
  5. Results are saved in "Output_path"

Input: four parameters of pyradiomics-extension are in "UserInputFile.txt". Note that, Users must provide the parameters in separate lines (i.e., 1,2,3 and 4).

  1. Img_path. Local path of DICOM images
  2. RT_path. Local path of RTstruct files
  3. Output_path. Local path of output
  4. ROI name (e.g., [Gg][Tt][Vv][-][1])

Output: the default output of pyradiomics-extension V1.0 is in Resource Description Framework (RDF) format.

Developers

  • Zhenwei Shi1,2
  • [Alberto Traverso]1,2
  • [Zhen Zhou]1,2
  • [Leonard Wee]1,2
  • [Andre Dekker]1,2

1Department of Radiation Oncology (MAASTRO Clinic), Maastricht, The Netherlands, 2GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands,

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