- pyradiomics-extension is allowed users input original DICOM files and RTstruture;
- computation of radiomics features on specific ROI in RTstruture;
- semi-automatic ROI name matching
- allow users to output radiomics features in different formats (e.g., RDF, csv, xml)
- install pyradiomics
- Download pyradiomics-extension in the sub-directory of pyardiomics
- provide input parameters in "UserInputFile.txt" (see below input) and parameters of pyradiomics in "Params.yaml"
- execute MainScript.py
- Results are saved in "Output_path"
Input: four parameters of pyradiomics-extension are in "UserInputFile.txt". Note that, Users must provide the parameters in separate lines (i.e., 1,2,3 and 4).
- Img_path. Local path of DICOM images
- RT_path. Local path of RTstruct files
- Output_path. Local path of output
- ROI name (e.g., [Gg][Tt][Vv][-][1])
Output: the default output of pyradiomics-extension V1.0 is in Resource Description Framework (RDF) format.
- Zhenwei Shi1,2
- [Alberto Traverso]1,2
- [Zhen Zhou]1,2
- [Leonard Wee]1,2
- [Andre Dekker]1,2
1Department of Radiation Oncology (MAASTRO Clinic), Maastricht, The Netherlands, 2GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, The Netherlands,