Christoph Kämpf, Michael Specht, Sven-Holger Puppel, Gero Doose, Kristin Reiche, Jana Schor, Jörg Hackermüller

The uap package is a framework to configure, run, and control large data multi-step analyses. Its main focus is on the analysis of high-throughput sequencing data.

The aim of this data processing pipeline is to enable robust and straightforward bioinformatics data evaluation. It is implemented in Python, runs under GNU/Linux and can be controlled from the command-line interface. Although the primary focus is the evaluation of sequencing data, its design allows for a variety of other applications.

The documentation of uap is available at Read the Docs.