Topological feature calculators infrastructure.
For installation and running instructions for the C code, refer to the manual.
The feature calculators work on a gnx instance. At first we'll define a graph (networkx Graph) and a logger
import networkx as nx
from loggers import PrintLogger
gnx = nx.DiGraph() # should be a subclass of Graph
gnx.add_edges_from([(0, 1), (0, 2), (1, 3), (3, 2)])
logger = PrintLogger("MyLogger")On that graph we'll want to calculate the topological features. We can do that in 2 ways:
- Calculate a specific feature.
import numpy as np
from features_algorithms.vertices.louvain import LouvainCalculator
feature = LouvainCalculator(gnx, logger=logger)
feature.build()
mx = feature.to_matrix(mtype=np.matrix)- Calculate a set of features.
import numpy as np
from features_infra.graph_features import GraphFeatures
from features_algorithms.vertices.louvain import LouvainCalculator
from features_algorithms.vertices.betweenness_centrality import BetweennessCentralityCalculator
features_meta = {
"louvain": FeatureMeta(LouvainCalculator, {"lov"}),
"betweenness_centrality": FeatureMeta(BetweennessCentralityCalculator, {"betweenness"}),
}
features = GraphFeatures(gnx, features_meta, logger=logger)
features.build()
mx = features.to_matrix(mtype=np.matrix)