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msk-redefining-cancer-treatment

1.Requirements

System: Linux

Version of Python : 2.7

Modules:

yaml==3.12	
numpy==1.13.0
pandas==0.18.1
tqdm==4.14.0
sklearn==0.18.2
gensim==2.3.0
keras==2.0.4
nltk==3.2.4

2.Getting started

Firstly install required modules:

pip install -r requirements.txt

Prior to running the script, ensure these input files are included in the 'RawData' folder:

stage2_test_text.csv
test_text
training_text

Run the scripts:

python 1_genetreat.py
python 2_LSTM.py
python 3_XBG.py
python #4_FinalStep.py

Remarks:

The default paths of all the files are the same for every script
Current configuration of model parameters achieved a score of 0.06~0.12 on the public leaderboard. Parameters can be changed as required

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Bidirectional LSTM stacked with Xgboost

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