Data can be downloaded from http://bioit.irc.ugent.be/suppl-data/2016/saelens-module-evaluation.zip Unzip the files within the data/ folder

Several scientific python packages are required to run the code. The easiest way to do this is to use the python 3.X Anaconda distribution (https://www.continuum.io/downloads). Alternatively you can install the manually using pip:

• Jupyter
• scipy
• Pandas
• numpy

After installation, run jupyter notebook in the notebooks/ folder. This folder contains several Jupter notebooks, each pertaining to a different part of the evaluation study.