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Count PubMed search results

Steps

# update cc.ini accordingly
$ pip install -r requirements.txt
$ crosscompute run tabulate-authors
$ crosscompute serve tabulate-authors
$ crosscompute run tabulate-journals
$ crosscompute serve tabulate-journals

Example queries generated

cat journals.txt

Science
Nature

cat authors.txt

Reshma Jagsi (temple)
salah ahmed

add affilliations for authors in parenthesis next to the name

this allows a more precise search (sadly pubmed doesn't offer much for precision)

cat keywords.txt

 poverty
 income

cat mesh.txt

 social class
 socioeconomic factors

Journal tool

("Nature"[Journal]) AND ("income"[Text Word] OR
    "poverty"[Text Word] OR "social class"[MeSH Terms] OR
        "socioeconomic factors"[MeSH Terms]) AND
        ("%s"[Date - Publication] : "%s"[Date - Publication])

Author tool

("Reshma Jagsi"[Author] AND ("temple"[Affilliation])) AND ("income"[Text Word] OR
    "poverty"[Text Word] OR "social class"[MeSH Terms] OR
        "socioeconomic factors"[MeSH Terms]) AND
        ("%s"[Date - Publication] : "%s"[Date - Publication]) AND

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Tabulate article counts on pubmed from constructed queries

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