Pypelines Utilizing a Modular Inventory

Nipype-based neuroimaging pipelines with a modular arhitecture.

*** Under development ***

Installation (developer version):

pip install git+https://github.com/spisakt/PUMI.git@v0.1.1a

Currtent focus:

• resting-state fMRI analysis
• machine learning

https://github.com/spisakt/PUMI/wiki

Requires:

• nipype (>=1.0.1) (http://nipype.readthedocs.io/en/latest/)

3rd party neuroimaging software

• FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/)
• AFNI (https://afni.nimh.nih.gov)
• ANTS (http://stnava.github.io/ANTs/)
• nilearn (http://nilearn.github.io)

Recommends:

• porcupine (>=1.4.0) (https://timvanmourik.github.io/Porcupine/)