git clone git@github.com:IntersectAustralia/hcsvlab_robochef.git
These instructions assume you have Homebrew installed
brew install antiword
Unfortunately, Homebrew doesn't install the resources correctly so you will have to fix this manually:
mv /usr/local/share/antiword/Resources/* /usr/local/share/antiword
rmdir /usr/local/share/antiword/Resources
brew install xpdf
Firstly, if you have not done so already, you will need to enable the EPEL repository. The easiest way is to install the latest appropriate RPM for you version and architecture from here, eg:
$ curl -O http://dl.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-8.noarch.rpm
$ sudo rpm -Uvh epel-release-6-8.noarch.rpm
$ sudo yum install antiword xpdf
Enter the following into the command line:
$ python -V
If it tells you that you have anything other than 2.7 installed, you will need to compile it from source by following these steps.
$ sudo yum groupinstall 'Development tools'
$ sudo yum install zlib-devel bzip2-devel openssl-devel ncurses-devel sqlite-devel readline-devel tk-devel
$ curl -O http://python.org/ftp/python/2.7.5/Python-2.7.5.tgz
$ tar xvf Python-2.7.5.tgz
$ cd Python-2.7.5
$ ./configure --prefix=/usr/local
$ sudo make && sudo make altinstall
You will make your life a million times easier if you also install VirtualEnv
$ curl -O https://pypi.python.org/packages/source/s/setuptools/setuptools-0.7.2.tar.gz
$ tar xvf setuptools-0.7.2.tar.gz
$ cd setuptools-0.7.2
$ sudo /usr/local/bin/python2.7 ez_setup.py
$ sudo /usr/local/bin/easy_install-2.7 virtualenv
Next, create a VirtualEnv for RoboChef in its directory:
$ virtualenv hcsvlab_robochef/
$ cd hcsvlab_robochef/
$ source bin/activate
Use pip or easy_install to install pyparsing, xlrd, rdflib and rdfextras, e.g:
pip install "pyparsing<=1.5.7" xlrd "rdflib<=3.4.0" httplib2 rdfextras
NOTE: pyparsing currently defaults to v2.0 which only works with Python 3
NOTE: rdflib versions higher than 3.4.0 have given us errors when processing Paradisec
Edit the config.ini file to point to the corpora and the desired output directory, e.g:
CORPUS_BASEDIR = /Users/ilya/workspace/corpora/
CORPUS_OUTPUTDIR = /Users/ilya/workspace/corpora_processed/
Add the hcsvlab_robochef parent directory to your PYTHONPATH, e.g:
export PYTHONPATH=$PYTHONPATH:/Users/ilya/workspace/
Run main.py in the hcsvlab_robochef directory:
python main.py