Installing pip
ubuntu:
sudo apt-get install python-pip
linux:
sudo yum install python-pip
Installing python modules
pip install synapseclient
#pip install pandas
#pandas is only used for annotations. This can be ignored for uploading
./upload.py --synapse_user user --password password upload --input /path/to/file --sampleId sample123 --dataType exparray --workflow workflow.sh
#The --workflow parameter is not required except for the initial upload or updates of the workflow file
#View ./upload.py upload -h for more help
./upload.py annotate sample123.csv exparray
#View ./upload.py annotate -h for more help