Skip to content

tristanic/iris-validation

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

42 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Iris-Validation

A Python package for interactive all-in-one graphical validation of 3D protein model iterations.

metrics

Calculates comprehensive per-residue metrics from a model (and reflections) file.

interface

Generates the HTML validation report.

utils

A number of functions that are utilised extensively within the library and are also useful on their own.

Iris-Tools

Companion scripts for the main module that include tests, timings, and the scripts used to generate data for the metrics module.

Installation

The package can now be installed via pip, with the command pip install iris-validation.

For now, the best way to install and run Iris is to use the Python environment that comes with CCP4, by running ccp4-python -m pip install iris-validation

You may first need to install pip, by downloading the install script from https://bootstrap.pypa.io/get-pip.py and running ccp4-python get-pip.py

This is because Clipper-Python, upon which Iris depends, is currently available in a number of different forms, most of which are broken in some way or another. As a consequece, only the Python 2 version of Iris is available. This will be remedied soon.

About

Package to generate an HTML report of per-residue multi-metric analyses for a model during macromolecular structural validation

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Python 89.8%
  • JavaScript 5.0%
  • CSS 3.8%
  • HTML 1.4%