Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
Data_Assess		Data_Assess
Rscripts		Rscripts
grep_seqs_by_barcode		grep_seqs_by_barcode
FastqToFasta.pl		FastqToFasta.pl
README.md		README.md
analyse_pipeline_16s.py		analyse_pipeline_16s.py
analyse_pipeline_16s_diversity.py		analyse_pipeline_16s_diversity.py
analyse_pipeline_16s_filter_samples.py		analyse_pipeline_16s_filter_samples.py
analyse_pipeline_16s_pick_otus.py		analyse_pipeline_16s_pick_otus.py
analyse_pipeline_16s_v1.py		analyse_pipeline_16s_v1.py
analyse_pipeline_genes_diversity.py		analyse_pipeline_genes_diversity.py
analyse_pipeline_genes_pick_otus.py		analyse_pipeline_genes_pick_otus.py
analyse_pipeline_its_diversity.py		analyse_pipeline_its_diversity.py
analyse_pipeline_its_pick_otus.py		analyse_pipeline_its_pick_otus.py
batch_data_assess.py		batch_data_assess.py
biopython_xml_for_nr_blast.py		biopython_xml_for_nr_blast.py
biopython_xml_for_nt_blast.py		biopython_xml_for_nt_blast.py
blast_fomat8_file_dereplication.py		blast_fomat8_file_dereplication.py
boxplot_rarefaction_curve.py		boxplot_rarefaction_curve.py
change_seqs_name.py		change_seqs_name.py
collated_seqs_otus_num.py		collated_seqs_otus_num.py
fasta.py		fasta.py
generate_upgma_tree_images.py		generate_upgma_tree_images.py
get_common_otus_in_groups_then_plot_venn.py		get_common_otus_in_groups_then_plot_venn.py
its_beta_diversity_params.txt		its_beta_diversity_params.txt
pick_open_reference_otus.py		pick_open_reference_otus.py
pick_otu_step_by_step.sh		pick_otu_step_by_step.sh
plot_average_taxo_abundance.py		plot_average_taxo_abundance.py
plot_heatmap.py		plot_heatmap.py
plot_heatmap_enhanced.py		plot_heatmap_enhanced.py
plot_nmds_with_axis_coordinates.py		plot_nmds_with_axis_coordinates.py
plot_pca_with_pc_vectors.py		plot_pca_with_pc_vectors.py
plot_pca_with_pc_vectors_no_group_infor.py		plot_pca_with_pc_vectors_no_group_infor.py
plot_rarefaction_curve.py		plot_rarefaction_curve.py
plot_rarefaction_curve_with_error_bar.py		plot_rarefaction_curve_with_error_bar.py
plot_venn_diagram.py		plot_venn_diagram.py
split_demultiplex_librarys.py		split_demultiplex_librarys.py
split_demultiplex_librarys_its.py		split_demultiplex_librarys_its.py
split_iontorrent_fq.py		split_iontorrent_fq.py
split_iontorrent_fq_enhance.py		split_iontorrent_fq_enhance.py
split_librarys_batch_miseq_enhance.py		split_librarys_batch_miseq_enhance.py
split_librarys_batch_miseq_genes.py		split_librarys_batch_miseq_genes.py
split_librarys_batch_miseq_its.py		split_librarys_batch_miseq_its.py
split_seqs_chimera_check.py		split_seqs_chimera_check.py
t_test.py		t_test.py
taxo_barplot_for30.56.py		taxo_barplot_for30.56.py
taxo_barplot_for_only_species.py		taxo_barplot_for_only_species.py
taxo_barplot_for_win.py		taxo_barplot_for_win.py
taxonomy_anova.py		taxonomy_anova.py
trim_se_fastq.py		trim_se_fastq.py
ucrss_params.txt		ucrss_params.txt
ucrss_params_denovo.txt		ucrss_params_denovo.txt
ucrss_params_denovo_for_genes.txt		ucrss_params_denovo_for_genes.txt
ucrss_params_its.txt		ucrss_params_its.txt
upgma_analyse_from_jackknifed_beta_diversity_step_by_step.sh		upgma_analyse_from_jackknifed_beta_diversity_step_by_step.sh
wilcox_test.py		wilcox_test.py

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